Vibrio lentus: ISX51_06455
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Entry
ISX51_06455 CDS
T09020
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vle
Vibrio lentus
Pathway
vle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISX51_06455 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vle03019
]
ISX51_06455 (rne)
03009 Ribosome biogenesis [BR:
vle03009
]
ISX51_06455 (rne)
Enzymes [BR:
vle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ISX51_06455 (rne)
Messenger RNA biogenesis [BR:
vle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ISX51_06455 (rne)
Ribosome biogenesis [BR:
vle03009
]
Prokaryotic type
rRNA processing factors
ISX51_06455 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WGS61887
LinkDB
All DBs
Position
ED252-c1:complement(1354178..1357315)
Genome browser
AA seq
1045 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
QAHIQLIRPDFMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVES
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPNKLEALKEAESKEPAEQTIRPKKIEEPALKGFAAPAQSA
PTPAPAPKAVEEKKVEPAAATQEPGLIGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNN
RNNGNRQRRDRNDNRRRNQRGERGERNERSERGDNRNENRDNKRRRKPVRDEKPEEQKEA
APQQTRQPRKPKQDRRNKPRDEQKLREEQAPSKLAEEGLQLAAEAQADKPEAPKAKPEAK
AVKIKERRQRRKLNKQVRVKDQLAQAEADNNADNASKEQKAQAANHEQAVAQEQKVAEQV
EATQVDAEQTEQEEPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMG
KVMPRFIPKPHHNQTKPEVAEVEVAVETQVVVQEQNVAQETAPQSNTAMAGGFACPELAM
GKVIIRREEAETVVEAQVTEAPAVVEEAPVVTAPVVEAPVETVKAEEVVAETIVEPVKAV
EATKAESAKVEEAPVVKAQAPKAAPKAVEAKKQAGSPMTKAPGPQEIKEIQVVAAPFRTE
RFVSKGAGSQAASNKAGAGMTKPQY
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgat
ggccagcgactgttcgatctagatatcgaaagtccaggtcacgagtcaaagaaagcgaat
atctacaaaggacgtattacccgtattgaaccaagcctagaagcggcatttgttgattac
ggcgcagaacgtcacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttatacataccaaggccgtcctagcattaaagaagtgctaagagaaggacaagaagta
atcgtacaagttgagaaagaagaacgtggtagcaaaggcgctgcactgacaactttcatc
tctttggctggtagttacttagttcttatgcctaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgaacgcactcaactgaaagcagcattaagcactcttgagcta
cctcaaggcatgggcttaatcgtgcgtacagctggtgttggcaaaagtgcagaagagcta
gagtgggacttgaacgttctattgaatcactggggcgctatcaagcaagcttctgattca
aatgcagctcctttccttattcaccaagaaagtaacgttatcgttcgcgcgattcgtgac
tatctacgtcgtgatattggcgagattctaatcgacagcaatactatttttgaacgtgca
caagcgcacattcaattaatacgcccagatttcatgaatcgcgttaagaaatacgatggt
gaagtaccactattcagccattaccagattgaaagccagatcgaatctgctttccaacgt
gaagttcgtcttccatctggtggttctatcgtgatcgacccaacagaagctctgacttct
atcgatatcaactctgctcgtgcaacaaagggcggcgatatcgaagaaacagcacttaac
actaacctagaagcagccgatgaaattgcacgtcaattacgtctacgtgacctaggtggt
cttgttgttatcgactttatcgatatgactccggttcgccaccaacgcgaagtagaaagc
cgtctacgtgatgctgttcgtttagatcgcgcacgtgttcagattggtcgtatttctcgc
tttggtcttctagagatgtctcgtcaacgtttgagcccatcactagcagaagcaagccac
cacatttgtcctcgttgtacaggtactggcgttgttcgtgataacgaatctctagcacta
tctgttctacgtctgatcgaagaagaagctctaaaagacaacactgcgcaagttcttgct
gtagtccctgttcctatcgcttcttacctattgaacgagaaacgtcgctcagtaaaccac
atcgagaagaaccaagaagttaagatcactgttgttcctaactctgacatggaaacgcca
cattttgaggttatccgtgtacgtgaaggtgaagaattcgatctactgtcttacctattg
cctaacaagctagaagctctaaaagaagcggaaagcaaagaaccagcagaacagactatt
cgtcctaagaagatcgaagagccagctctgaaaggtttcgcggctccagctcaatcagca
ccgactcctgctccagcccctaaagctgttgaagagaagaaagttgaaccagctgctgca
acgcaagaaccaggtctaattggtcgtttcttcaaagctatcggtagcttcttatttgga
tcttcaactcaagaagagaagaaagaagaagagaagcaagaagagaagcctaagaacaac
cgcaacaacggcaaccgtcaacgccgtgatcgtaacgacaaccgtcgtcgcaaccaacgt
ggtgagcgcggtgaacgtaacgagcgcagcgagcgtggtgacaatcgtaacgaaaaccgt
gacaacaaacgccgtcgtaagcctgtacgtgatgagaagcctgaagagcaaaaagaagca
gctccacagcaaactcgtcaaccacgtaagcctaagcaagatcgtcgcaataagccacgt
gatgagcagaagctacgtgaagagcaagctccatctaaattagcagaagaaggtctacag
ctagcagcagaagcgcaagctgataaacctgaagcgccgaaggcgaagcctgaagcaaaa
gctgtgaagattaaagagcgtcgccagcgtcgtaaactgaacaagcaagttcgtgttaaa
gatcaactagctcaagcagaagctgacaacaatgccgataacgcttcaaaagagcaaaag
gcacaagcagcaaatcacgaacaagctgtagctcaagaacagaaggttgctgaacaagtt
gaagcaactcaagtagacgcagagcaaactgaacaggaagagccgaagcaacgtcgtaac
cgccgttcgccacgtcacctacgtgcaagtggccaacgtcgtcgtcgcggtcgtgatcgt
cgccctaacccattccgcctacgtaaaggtggtgtagcttctccagagatggctatgggt
aaagtgatgcctcgcttcattccaaaacctcaccataatcagacaaaacctgaagtggct
gaagttgaagtagcagttgaaactcaagttgttgtacaagagcaaaacgtagctcaagag
acggcaccgcaaagtaacactgctatggcaggcggctttgcatgtcctgaacttgcgatg
ggtaaagtcattatccgccgtgaagaagctgaaactgtcgttgaagctcaggtaactgaa
gctcctgcggtagttgaagaagctccggtagttacagcaccagtagttgaagctcctgtt
gagacagttaaggctgaagaggttgtagcagaaacaattgttgaaccagtaaaagcggtt
gaagcgactaaagcagaaagtgcaaaagtagaagaggctcctgtggtaaaagcacaagct
cctaaagcagcaccgaaggcagtagaagcgaagaaacaagctggctctccaatgactaaa
gctcctggtcctcaagagatcaaagagattcaagttgttgcggctccattccgtactgag
cgttttgtatcgaaaggtgcaggtagccaagcagcgtcaaataaagccggcgctggcatg
actaaacctcaatactaa
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