Vibrio lentus: ISX51_06775
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Entry
ISX51_06775 CDS
T09020
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vle
Vibrio lentus
Brite
KEGG Orthology (KO) [BR:
vle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vle03032
]
ISX51_06775 (topA)
03400 DNA repair and recombination proteins [BR:
vle03400
]
ISX51_06775 (topA)
Enzymes [BR:
vle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ISX51_06775 (topA)
DNA replication proteins [BR:
vle03032
]
Prokaryotic type
DNA Topoisomerases
ISX51_06775 (topA)
DNA repair and recombination proteins [BR:
vle03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ISX51_06775 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WGS61949
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Position
ED252-c1:1433389..1436019
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGKKATAVSTKGMSPED
KARIKKEKDRKALIKKMGINPYNEWEANYQILPGKEKVVAELQKLAENADHVYLATDLDR
EGEAIAWHLREIIGGDETRYKRVVFNEITKNAIQQAFETPGELNIDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDVHADTKTTDKTDF
RLQVAQKDGVAFRPVNEAQTLAAVSVLDKAQYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSSEAVEAAREYIGSEFGAQYLPAKALV
YGSKEGAQEAHEAIRPSSVDVKSEDLNGVDADAHKLYSLIWNQFVACQMTPAQYDSTTVS
VKADEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQIGDKLDLIALDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDGSFN
DLMNYDFTARMEQKLDQIAEGEASWKGVLDNFFTDFTGDLEQADLDEDAGGMKPNHIVET
DIECPTCSRKMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYVVEHGEFKVKGYDGPLVECDKCGS
DMVLKNGRFGKYMDCTSEDCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVEELVRFKDRISPKFQYLASAPAADPDGKPAVVRFSRKTK
ENYVRTEVDGKPSGWTALYIDGKWEVTDKRKKPKEK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttatagtggagtcgccggccaaggctaaaaccatcaataaatat
cttggcaaagactttgtcgttaagtcgagtgtaggtcacgtacgtgatttaccaacggca
ggtcaaagcaccggtaaaaaggctactgcagtttcaaccaagggtatgagcccagaagat
aaagctcgtatcaagaaagaaaaagatcgcaaagcgcttattaaaaagatgggtatcaac
ccatacaatgagtgggaagcgaactaccaaattctacctggtaaagaaaaagtcgttgct
gaattgcaaaaactggctgagaacgcagaccatgtttatctcgcaaccgatttggatcgc
gaaggagaagctatcgcatggcaccttcgtgagatcatcggtggcgatgaaacgcgatac
aaacgagtggtttttaacgaaattactaagaatgctattcagcaagctttcgaaactcca
ggtgagctaaacatcgatggcgtaaacgctcagcaagcacgacgttttatggaccgtgtt
gtgggctttatggtgtcacctctgctttggaaaaaagtagcacgaggcctatccgctggc
cgtgttcaatcggtagctgtaaaactgctggttgagcgtgagcgcgagatcaatgccttt
atccctgaagagttctgggatgtgcatgctgatactaaaacgacggataaaacagatttc
agactgcaagttgcacagaaagatggtgtcgctttcagacccgtaaacgaagcgcaaact
ttggctgccgtcagtgtattagacaaagctcaatacgaagtatgtaaacgtgaagaccgc
ccaacgaagagtaagccgtctgccccttacatcacgtcaacgttgcaacaagctgcgagt
acgcgtcttggctacggcgtaaagaaaaccatgatgttggctcagcgtctctatgaggcg
ggttacatcacttatatgcgtactgactcgactaacttgagttcagaggctgtagaggcc
gcacgtgaatacatcggttctgagtttggtgcgcaatatttgccagctaaagcacttgtt
tacggtagcaaagagggcgcacaagaagcccacgaagcgattcgtccttcaagcgttgat
gtgaagtctgaagacttaaatggtgttgatgctgatgctcacaaactttactcgctgatt
tggaatcaattcgtcgcgtgtcaaatgacgccagcgcaatacgattcaacaacagtaagt
gttaaagcggatgagtacacgctgaaagcgaaaggtcgtatccttaaatttgatggttgg
actcgcgttcaacgtccaatgggtaagaacgaagatactattcttcctgcagttcaaatt
ggcgataagcttgacctgattgctctagaccctaaacagcacttcactaagccaccagca
cgtttcactgaagctgcattggttaaagaactagagaagcgcggtattggtcgtccgtca
acttacgcgtcaatcatctcgacgattcaagatcgtggctatgtgaaagttgaacagcgt
cgtttctatgctgaaaaaatgggtgaaattgttactgaccgtctagacggcagcttcaat
gacctaatgaactatgactttacagctcgtatggagcaaaagttagaccaaatcgcagaa
ggcgaagcgagctggaaaggcgttctagataacttcttcactgactttactggcgaccta
gagcaagcggatctcgatgaagatgcgggtggcatgaagccaaaccatatcgttgaaacc
gatattgagtgtccaacttgtagccgtaaaatgggtattcgtactgcttcaacaggcgta
ttcctaggttgttctggttatgctcttccaccaaaagaacgttgtaagacaacgatcaac
cttggtgatgaagaaggcattatcaacgttctagaagaagacgttgaaaccgcagcactt
cgagctaaaaagcgttgtcctatctgtgaaacggcaatggatgcttatctgattgatgat
aagcgtaagatgcacgtatgtggtaacaaccctaactgtgaaggttatgtggttgaacac
ggcgagttcaaagtgaagggctacgatggtccgcttgttgagtgtgacaagtgtggttct
gacatggttcttaaaaacggccgttttggtaaatacatggattgtacgagtgaagattgt
aaaaacactcgtaagattctgaaaaacggcgaagttgcgccaccgaaagaagaccctgtg
cacttccctgagcttccatgtgaaaactcagacgcgtactttgttcttcgtgatggtgct
tctggcttgtttatggcggcgagtaatttccctaaatcacgtgaaacccgtgcaccattg
gtggaagagcttgttcgttttaaagaccgtatttcacctaaattccaatacctagcatcg
gcacctgctgctgacccagatggtaagccagcagtagttcgctttagtcgtaagaccaaa
gaaaactatgttcgaactgaagtagacggaaaaccttctggttggaccgctttgtatatc
gacggcaaatgggaagtaacggataaacgtaagaagcccaaagaaaagtaa
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