Vibrio lentus: ISX51_13985
Help
Entry
ISX51_13985 CDS
T09020
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vle
Vibrio lentus
Pathway
vle03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ISX51_13985 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vle03400
]
ISX51_13985 (sbcB)
Enzymes [BR:
vle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ISX51_13985 (sbcB)
DNA repair and recombination proteins [BR:
vle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ISX51_13985 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ISX51_13985 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ISX51_13985 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WGS60378
LinkDB
All DBs
Position
ED252-c1:complement(3108241..3109665)
Genome browser
AA seq
474 aa
AA seq
DB search
MSSDNQSTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPGPE
AALITRITPQKAMSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQNGNSRWDLLDVMRAVHALRPEGINWPTNDEGFPSFKLEHLSVANGIEHENAHD
AMADVIATIELAKKLKTAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVIDLAKDPSPLLEMDADELKERLYTKRSELTEDELPVPIKLV
QLNKCPILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSN
DVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARHFPWTLDE
AEQLKWANHCREYYESRLEDYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagataatcagtcgacctacttctttttcgattacgaaacatggggcgttagc
ccagcgaaagatcgcccgagtcagttcgccggtgttcgtaccgaccaagatttcaatatt
atcggagagcctttggttatctactgccaacctcctgctgattatctgcctggacctgaa
gccgcattaataacccgtattacacctcaaaaagccatgtctcaaggcctacctgagcct
gagtttatcgctaagattcatgccgagcttgctaagccaaatacgacgagccttggctat
aacagcatccgattcgatgacgaagtaacgcgatacacctgttaccgtaactttatcgac
ccatatgcgtggagctggcagaacggcaattcacgttgggatttactggatgttatgcgt
gcagttcatgcactgcgtcctgaaggtattaactggccaacaaacgatgaaggttttcca
agtttcaaactggaacacctatctgtggcaaacggcatcgaacacgaaaacgcgcacgat
gcgatggctgatgtgattgcgactatcgaactggctaaaaagttaaagaccgcgcaacct
aagatgtttgattacctctacaacatgcgccacaagcgtaagttgaatgagttagtcgac
atcgtaaacatgacgcctttaatgcacgtttctggcatgttcggtcgtgattgtaattac
acaagctgggtggtgcctatggcgtggcatccgaccaaccaaaacgcggttattgtgatc
gacctagcgaaagacccaagtcctttactggaaatggatgcggatgaactaaaagaaagg
ctttataccaagcgcagtgagcttactgaagacgaactgccagtaccaatcaaactggta
caactcaacaagtgccctattctcgcgccagcaaaaacgctcactgctgaaaatgctgag
acgatcggtatcgatcgtcaacagtgtttgaagaatctagccctattacgtgaacatcca
gagatccgtgaaaagctgatcggtctatattcacaagagcgtgaatacgagaaaagcaat
gacgtagacacacacctttacgacggcttcttttcaccagccgacaagaccgcgatgaac
atcattcgcgaaactgacccaaataacttggcagcactggacatcacttttagtgacgaa
cgtattaagcctttgttgttccgttaccgcgctcgccattttccatggacgctagacgaa
gctgaacaactaaaatgggctaaccactgtcgtgagtattatgagagccgtttagaagat
tacatgctaaaccttgaaaacctcgcgcatgaacatgaaagcgacgagaagaaaatggcc
atcttgaaagcggtttatcagtacgtagaaaagttagctagttaa
DBGET
integrated database retrieval system
