Vibrio lentus: ISX51_17220
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Entry
ISX51_17220 CDS
T09020
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vle
Vibrio lentus
Pathway
vle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISX51_17220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vle03019
]
ISX51_17220
03009 Ribosome biogenesis [BR:
vle03009
]
ISX51_17220
Enzymes [BR:
vle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ISX51_17220
Messenger RNA biogenesis [BR:
vle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ISX51_17220
Ribosome biogenesis [BR:
vle03009
]
Prokaryotic type
rRNA helicases
ISX51_17220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
WGS63359
LinkDB
All DBs
Position
ED252-c2:366647..368731
Genome browser
AA seq
694 aa
AA seq
DB search
MESVSDWISIGIDRAPGTFCLLIYSGIPMSESVIQFNELALNDNILSALDSMGFVSPTPI
QAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMAPTRELAIQVAA
EIKNLGRDINGLKVLEIYGGASIVDQMRALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHT
FVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAG
TNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKA
AALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHR
IGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQLPQRDEVAAARVAKLGAELE
TEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQGKSPLFYVGEDPMIAAIERDKN
RRKERREDRDNGRGDRNFNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIK
LDQGSTYVQLPKAMNSETAGKLSKLRIRQKEAGAVVVDFNDFREPRRGGGGRDGNRGGRD
GGRGGRDGGGYRGNREGGNREGGNREGGNGGRGGYRGNRDGARDGNSAGGRDGERRFDRN
RGGDHRGNHRGERGHGNAAGNGGNRGRRPERSEG
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagtatctgattggatcagtattggaattgatagagctcccgggaccttttgt
ttacttatatatagtgggatcccaatgtccgaatctgtaattcaatttaatgaattagcc
cttaacgataacattctttcagctcttgatagcatgggtttcgtttctccgactccaatc
caagcagcagctattcctcttcttcttgaaggccgtgacgcactaggtaaagcacagact
ggtactggtaaaacagcagcattctctctgcctttacttaacaaaatcaacctgaaccaa
cacaaaccacaagcaatcatcatggctcctactcgtgagctagctattcaagttgctgcg
gaaatcaaaaacttaggtcgtgacatcaacggtcttaaagttcttgaaatctacggtggt
gcttcaattgttgaccaaatgcgtgctctaagccgcggtgctcacattgttgttggtact
ccaggtcgtgttaaagacttactaactcgtgaccgtctacacctagatgaagcgcataca
tttgttcttgatgaagcagatgaaatgctaaaaatgggcttcgtagatgacgttacttgg
atcctagagcaagcgccagaatctgcacaacgtgtacttttctctgcgactatgcctcca
atggttaagactattgttgaccgttacctacgtaacccggctaaagttgacgttgctggt
actaaccacacagttgacaaagtagcgcagaactactgggttgttaaaggcgtagaaaaa
gacgaagcaatgtctcgtcttcttgaaactgaagaaactgacgcgtcaatcgtattcgta
cgtactcgtcaagacactgagcgtctagctgattggctatctgcacgtggctttaaagct
gctgcactgcacggtgatattcctcagtctctacgtgagcgcactgttgatcacatcaaa
caaggtgttatcgatatcctagttgcaactgacgttgtagcacgtggtcttgatgttcca
cgtatcactcacgtatttaactacgacatcccattcgatgttgaatcttacatccaccgt
attggccgtactggccgtgctggacgtaaaggtaaagcgatcctactagttcgcactaac
caaatccgtatgcttcgcacaatcgagcgtgtaactaagtctcaaatggaagaaatccaa
cttccacaacgtgacgaagttgctgctgcacgtgttgctaagcttggtgctgagcttgaa
actgagaaagagagcaaagctctagaaaacttcgcaggtttaatctctacactacaagaa
tctctagaagttgatgctgctactctagctgcaatgcttcttaagcgtcagcaaggtaag
agccctctattctacgttggcgaagacccaatgatcgctgctattgagcgtgataagaac
cgtcgcaaagagcgtcgtgaagaccgtgacaatggtcgtggcgatcgtaacttcaatacg
caagactgggatacgtaccaactacaagttggccgtgagcaaggcgttcaggttaaagac
atcgttggcgcactagcaaacgaacttggcctaactaaaggttctatcggtgctatcaag
ctagaccaaggttctacttacgttcaactgccaaaagcaatgaactctgaaactgctggt
aagctaagcaaacttcgcattcgtcaaaaagaagctggcgctgtagttgttgatttcaac
gacttccgtgagcctcgtcgtggcggcggcggtcgtgatggcaaccgtggcggtcgtgat
ggcggtcgtggcggtcgtgatggcggcggctaccgtggtaaccgtgaaggcggtaatcgc
gaaggtggtaaccgtgaaggtggcaatggcggtcgtggtggctaccgtggcaaccgtgac
ggtgcacgtgatggtaactcagctggtggccgtgatggcgagcgtcgtttcgaccgtaac
cgtggtggcgatcaccgtggtaaccaccgtggcgaacgtggccatggcaacgcggcaggc
aatggcggcaaccgtggtcgtcgtccagagcgtagcgaaggttaa
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