Vibrio lentus: ISX51_20925
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Entry
ISX51_20925 CDS
T09020
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vle
Vibrio lentus
Pathway
vle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISX51_20925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vle03019
]
ISX51_20925
Enzymes [BR:
vle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ISX51_20925
Messenger RNA biogenesis [BR:
vle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ISX51_20925
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WGS62512
LinkDB
All DBs
Position
ED252-c2:complement(1247809..1249431)
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AA seq
540 aa
AA seq
DB search
MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL
EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL
RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ
NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKD
NDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVAT
DIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER
LIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKN
KRHVSGSGSAPKRKPNANKPNSGNKGSDSNSAVAGDDKSVRNNGSNYKRGNAAGGAEKNT
NSGGQNGAGKPKKSGYGGSYGPGRSSNQSASNKPSGNKPSTNKPSGNKPSRNRSKPAAQK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctcccttggcctttctgaaccgatccttaaagctattgaagcacaaggt
tacgataagccatcaccaatccaagagaaagccgtaccagctgtcctaacgggcaaagat
gtaatggccgctgctcaaacaggtacaggtaaaactgctggcttcacgctacctattctt
gaaatgttatcaaaaggtcctcgcgtacgtcagaatcaagttcgtgcgttagtactaaca
ccgactcgtgagcttgctgcgcaagtgaatggcagcgtagttaagtatggtatcaatcta
cctttgacttctacggttgtatttggtggcgtgaaaattaatcctcagatgcaaaaactg
cgtaaaggtagtgatgtactggtggcaacaccgggtcgcctacttgacctatacaatcaa
aatgcagtgcgttttgatcagctagagatccttgtgttagatgaagctgaccgcatgcta
gacatgggtttcattcgcgacatccgtaagatcttggctttcttgcctaaaaaacgtcag
aacctactgttctcagcaacgttttctgatgatattcgtggcttggctaaaggcttagta
aacaacccagttgaaatctcggtaagccctgcaaactcaacggcaccaactgttgaacag
agcatttatccagtagataaaaagaaaaaagcaccaatgctcgctaagctgatcaaagat
aatgattggcgacaagtgctcgtgttcagcaaaacgaaacacggtgcgaacaagctttct
cacttccttgacgagcaaggcatctctgcggcacctattcatggcaacaagagccaaggc
gcgcgtactaaagccctagagaacttcaaaacgggtaaagtacgagtattagtggcaaca
gatattgcagctcgtggtatcgatattccgcaactgcctcaagtagtgaacttcgacctt
ccaaacgtatcagaagattacgttcaccgtattggtcgtactggccgtgctggtgaagtg
ggtaaagcaatttcattggtatgtgctgatgaagtgggtgaactgtttggtatcgagcgc
cttattcagcaagtgctggagcgccgtgaacttgaaggttttgcaccggtaaacaaactg
cctgaatctcgtttggattcgcgtccgattaagcctaagaagccgaaaaagacacgtgaa
cactctgatggtcaacgctctggtgagaatgctcgcgggcacaaaccagcaggtaaaaac
aagcgtcatgtttctggttcaggttctgctcctaagcgtaagccaaatgcgaacaagcct
aactcaggtaacaaaggctctgacagcaactctgcagttgctggtgatgataagtctgta
agaaacaatggtagcaactataagcgcggtaatgctgctggaggcgctgagaagaacacc
aattcaggcggtcaaaacggtgctggtaagccgaagaaatcaggttacggtggtagctat
ggccctgggcgctcatcaaaccaatcggcgtctaacaagccttctggaaataaaccttcg
acgaacaaaccgtctggtaacaagccatctagaaatcgctctaagcctgctgctcaaaaa
taa
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