Vibrio lentus: ISX51_23340
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Entry
ISX51_23340 CDS
T09020
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vle
Vibrio lentus
Pathway
vle03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ISX51_23340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vle03000
]
ISX51_23340
03400 DNA repair and recombination proteins [BR:
vle03400
]
ISX51_23340
Enzymes [BR:
vle01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
ISX51_23340
Transcription factors [BR:
vle03000
]
Prokaryotic type
Helix-turn-helix
AraC family
ISX51_23340
DNA repair and recombination proteins [BR:
vle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ISX51_23340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DmsR_N
Motif
Other DBs
NCBI-ProteinID:
WGS62966
LinkDB
All DBs
Position
ED252-c2:1793964..1795340
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AA seq
458 aa
AA seq
DB search
MSKSIHHNSTLTSEQCHLARYARDARFDGMFFTAVKTTGIFCRPICPASPPKEENVEYFS
HQAQALKAGYRPCLRCRPDSAPFSPAWKGVETTFLRAMQLIDNGALNSGSIVDLAARLGI
SDRYLRTLFDNYIGVSPKQYSLYSQLMFAKQLLHTSSMSITDVGFASGFNSTRRFNDAFQ
KELQLSPSQIRRAKPSNNLSNHIQLSFHGPLDWDHLLGFYRRRMIEGLEEVGDGYYQRTV
NVNGSKGWFKATLAKESSLDIEFELDDMSQLRSLIANIRRMFDLDVDISKVEDFFTTIDP
NLVAKSGIRIPGVWSAWEAGVRAILGQQVSVTAAIGQLNLLVKELSGEHEKASFPTPKQI
AEADVSFLRMPGSRKETLKRFAQYMVDNEAEHPSKWIDLKGIGPWTIQYALLRGLSEPNH
LLVGDLVVKKFIEHRPAINAESVSPWGSYATFHCWNQS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagtattcatcacaacagtacgttaacgagtgagcagtgccatttagctcgt
tatgcacgagatgctcgttttgatgggatgttttttactgcggtgaaaacgacgggcatt
ttttgtcgacctatttgccctgcgagcccacccaaagaagaaaatgtcgaatacttttct
catcaagctcaggctttgaaagcgggttatcggccctgtttacgttgtcgcccagacagc
gcacctttttctcctgcgtggaaaggggttgaaactacctttctgcgagctatgcaatta
atcgataacggcgcgctgaattcggggtcgattgtcgaccttgccgctcgactaggcatc
tcagatcgttatttacgaaccttgttcgacaattacatcggagtgtcacccaagcaatat
agcctttatagccagttgatgtttgccaagcagttactgcataccagcagcatgagtatt
acagacgtaggctttgcgagtggttttaacagcacgcgccgtttcaatgatgcctttcaa
aaagagctgcagctttcgccaagtcaaatccgaagagccaagccaagtaacaacctaagt
aatcatatccaactcagttttcatggcccgttggactgggatcatttgctgggcttttat
cgacgacgaatgattgaaggcttagaagaggtgggcgacggctattaccaacgcacagtg
aatgtgaatggttcgaagggctggttcaaggcgactttagccaaagagagcagcttggat
attgagtttgagttggatgatatgagccaactaagaagcttgatcgccaatattagacgt
atgttcgaccttgatgttgatatcagcaaagttgaagatttctttaccaccattgatccc
aacttggttgctaagagtggtattcgcatccctggcgtatggagtgcttgggaagccgga
gtaagagcgattctaggtcaacaagtttcggtaacagcggcgattggtcagctcaaccta
ttggtgaaagagctttctggtgagcatgagaaagccagcttcccaacgcctaaacagata
gcggaggctgatgttagcttcttgagaatgccaggaagtcgcaaggaaactttaaagcgt
tttgcccaatacatggtcgataacgaagccgagcatccttctaagtggattgacctcaaa
ggtattggtccttggacgatccaatatgcgctgctgcgtgggctcagtgagcctaaccat
ttgctcgtaggcgatttggtggtgaaaaagttcattgagcatcgccctgctattaatgca
gagagcgtgtcgccgtggggcagctacgccacattccattgttggaaccaatcttaa
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