Vulpes lagopus (Arctic fox): 121478879
Help
Entry
121478879 CDS
T07435
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121478879 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vlg03032
]
121478879 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
vlg03400
]
121478879 (TOPBP1)
DNA replication proteins [BR:
vlg03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
121478879 (TOPBP1)
DNA repair and recombination proteins [BR:
vlg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121478879 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
121478879
NCBI-ProteinID:
XP_041590233
LinkDB
All DBs
Position
19:complement(31199030..31261077)
Genome browser
AA seq
1513 aa
AA seq
DB search
MSRNDKEPFLVKFLKSSDNSECFFKALESIKEFQSEEYLQIITEEEALKIQENDRSLYIC
DPFSGVVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTISCTSLEKDK
REEVHKYVQMMGGRVYRDLNISVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
EKKISRYTDVNMEDFKCPIFLGCIICVTGLCSLDRKAVQQLTVKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTTQWFFDSVDKGFCQDESIYKTEPRPETKTMPDTSTPT
GQIHTVDSRTLSDVSHISNINASCINESMCNSVLNSKVEPTLENLENLDVSAFQAPEDLL
DGCRIYLCGFSGRRLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSAHRP
HVVGAKWLLECFSKGYMLPEEPYIHANYQPVEIPVSDQSENKTALLKKNNSFSKKDFASV
EKHEQADEDLLSQYVNNNPTVGETVKSEVEPFNDSTHISPQEENQSSVTHCLPDGSTTTE
EGLFSQKSFLVLGFSNENESNIANIIRENAGKVVSLQSRIVADYAVVPLLGCEVEATVGE
VVTNTWLVTCIDYQTLIDPKSNPLFMPVPVMAGMTPLEDCVISFSQCAGAEKDSLTFLAN
RLGASVQEFFVRKSNAKKGMFASTHLVLKEPGGSKYEAAKKWNLPAVTISWLLETARMGK
RASESHFLIEKSTKEEQSLETEITNKVNLNPDTPEQPVAHLETQRKTAVTPLDMNRFQSR
AFHAVISQHTKQVSTSSPVGQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
GGPSQQKRKLSTPLSEVIVRNLKLALANSSRNAVALSASPRLKDAQSEKDEAPKPLHKVV
VCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNREYKSVKERGVHIV
SEHWLLECAQEYKHLPESLYPHTYNPKMSLDISTVQDGRISNSRLLSADSTTKDDEPDHL
PGEENDIDNMTTSNKESATSNGDGRNDSKGALTQTLEMRENFQKQLQEIMSATSIVKPQG
PRASLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQTVPDINTEPSQNEQIIWDDPT
AREERARLASNLQWPSCPTQYSELQVDIKKLEDSPFQEPLHDPEIAEQAVCDPGNMCVTE
APKHPTSEELETPVKDSHLIPTPQAPSIAFPLANPPVAPHPREKIITIEETREDLKKQYI
FQLSSLNPQERIDYCHLIEKLGGLVIEKQSFDPNCTHIVVGHPLRNEKYLASVAAGKWVL
HRSYLEACRTAGHFVLEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGI
VEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDFNKLKPDDS
GVNIAEAAAQNVYCLKTEYIADYLMQESPPPVENYCLPEAVSFLQNNKEPGPGLSQKRKA
PTEKNKIKRPRVN
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgacaaagaaccgtttcttgtgaagtttttaaagtcttcagacaattcc
gaatgtttttttaaagctctggagtcaataaaagaatttcaatcagaagaatatcttcag
attattacagaagaagaggcattgaagatacaggaaaatgataggtcactttatatctgt
gacccttttagtggcgttgtctttgatcacctcaaaaagcttggctgcagaattgttggc
cctcaagtagtcatattttgtatgcaccaccagagatgtgtcccaagagctgaacatcca
gtctataatatggttatgtctgatgtaactatatcttgtacaagcctggaaaaagacaaa
agggaagaagttcataaatatgtacaaatgatgggtggacgtgtatatagagatcttaat
atatcagtaactcatcttattgcaggagaagttggcagcaaaaaatacttagttgctgca
aacctaaagaaaccgattttgcttccttcttggattaaaacactttgggaaaagtcacaa
gagaaaaaaatatctagatatactgatgtaaacatggaagacttcaagtgcccaatattt
cttggttgcataatctgtgtgactgggttgtgtagcttagataggaaggcagttcagcaa
ctcacggttaagcatggaggtcaatatatgggacaactgaaaatgaatgaatgtacacac
ctcattgtgcaagaaccaaaaggtcaaaaatatgaatgtgccaagagatggaatgtacac
tgtgtgaccacacagtggttttttgacagtgttgacaaaggtttttgtcaggatgaatcc
atatacaagacagagcctagaccagaaacaaagactatgcctgatacttcaactcctact
ggccagatccacacagttgacagtcgtactctttcagatgtcagccatatttccaacatc
aatgcaagttgcataaatgaatcaatgtgtaattcagtgcttaatagcaaagtggagcct
acccttgaaaatctagaaaatttggatgtcagtgcatttcaagcacctgaagatttatta
gatggttgtcggatctatctttgcggttttagtggcagaaggctagataaactaagaagg
cttattaacagtggaggtggagttcgttttaatcagctcaatgaagatgtaactcatgtt
atagtgggagattatgatgatgaattgaagcagttttgggataaatcggcccacaggcct
catgtagtaggagcaaaatggttgctggagtgttttagtaaaggttatatgcttcctgaa
gagccatatatccatgctaactaccagccagtggaaattccagtttcagatcaatctgaa
aataaaacagcccttttaaaaaagaacaacagcttttctaagaaagactttgcttctgtt
gaaaagcatgaacaagctgatgaagatctgctctctcaatatgtaaataataacccgaca
gtaggtgaaactgtgaagtctgaagttgagccctttaatgactctactcatatttctcca
caagaagaaaaccagtcttctgtcactcattgcctccctgatggttctacaactactgaa
gaaggtttatttagccaaaagagtttcctggttttggggtttagtaatgaaaatgaatct
aatattgcaaatatcataagagaaaatgctggaaaagtcgtgtcccttcagagcagaatt
gttgctgattatgctgtggttcctctgctggggtgtgaagtagaagcaactgtaggagaa
gtcgtcacaaatacatggctggtaacttgtatagactatcagactttaattgatccaaag
tcaaatcctctcttcatgccagtcccagttatggcaggaatgactcctttagaggattgt
gttatttcattcagccagtgtgcaggagcagaaaaagattcattgacattcttagcaaat
cgccttggagctagcgttcaagaattctttgttcgcaaatccaatgcaaagaaaggcatg
tttgccagtacacatcttgtattgaaagaaccaggtggttcaaaatatgaagctgcaaag
aagtggaatttgccagcagtcaccatatcttggctgttggagactgctagaatgggaaag
agagcaagtgaaagccattttctgattgaaaagtcaactaaagaagaacaaagtttggaa
actgaaataacaaacaaggtgaatctaaatccagatactccagagcagcctgttgcacac
ctggaaactcagaggaaaacagctgttacacctttagatatgaaccgctttcagagtaga
gctttccatgctgtgatctcacaacacaccaaacaggtttcaacctcctcgccagtggga
cagccacttcagaaggagccctccttacatctggatacaccatcaaagtttctgtccaag
gacaaactcttcaagccttcctttgatgtgaaggatgcacttgcagccttggaaactcca
ggaggtcccagccagcagaaaaggaaactgagtacaccactttcagaagtcattgtcaga
aacttgaaacttgctttggcaaatagctctcgaaatgctgttgctctttctgccagccct
cggctgaaggatgcccaatcagagaaggatgaagctccaaagccacttcacaaggtagtg
gtatgtgtgagtaagaaactcagcaagaagcagagtgaactgaatgggatcgcagcctct
ttaggagcagattacagatggagttttgatgaaaccgtgactcatttcatttatcaaggc
cgaccaaatgacactaaccgagagtataaatccgtaaaagaaagaggagtacacattgtt
tcagagcactggcttttagaatgtgcccaagagtataaacatcttcctgaatctctttat
ccacatacttataatcccaaaatgagcttggatatcagtacagtgcaagatggcagaatc
tctaatagtcgactgctctcggctgattcaacgacaaaggatgatgagccagatcatttg
cctggagaagaaaacgatatagacaatatgaccaccagtaataaagaatctgcaacatca
aatggagatggaaggaatgactctaaaggagctctgacacagactttggagatgagagag
aattttcaaaagcagctgcaagagataatgtctgcaacatcaatagtgaaacctcaggga
ccgagggcttccctttcaagaagtggttgtaacagtgcttcttcaacccctgatagcact
cgctctgcccgcagtgggcgaagtagagtcctggaggcactgaggcagtctcgtcaaaca
gtacctgatatcaacacagagccctcccagaatgaacagatcatttgggatgacccgaca
gccagagaagagagagcaaggcttgccagcaatctgcagtggcctagttgtcccacacag
tattctgagcttcaggttgacattaaaaaattggaggattctcctttccaggagccttta
catgatccagaaattgctgaacaggcagtctgtgatcccggaaacatgtgcgtgactgaa
gccccaaaacacccgacctctgaagaactggaaacaccagtaaaagacagccacctgatc
cctacacctcaagctcccagtattgccttccccctagccaacccacctgtggctccacac
cctagagaaaagattataacaatagaggaaacccgtgaagacttgaaaaaacagtacata
tttcagttgtcgtctctgaatcctcaagaacgtattgattattgtcatctgattgaaaaa
ctaggtggattagtaatagagaagcaaagctttgatcccaattgtacacacattgttgtg
ggacatcctcttcgaaacgagaagtatttagcctcagtggcagctgggaagtgggtactt
catcgctcctacctggaagcatgccggactgctgggcacttcgtgctggaagaagactat
gaatggggaagtagttccatacttgatgttttgactggaatcaatgtacagcaacgaaga
ctagcacttgcagcaatgagatggaggaaaaaaatccagcaaagacaagaatcaggcatt
gttgagggggcatttagtgggtggaaggttatcttacatgttgaccagtcccgagaagca
ggattcaaacgccttcttcagtcaggaggagcaaaggtactacctggtcattctgtacct
ttatttaaagaagctacacatctcttttctgacttcaataaactgaaaccagatgactca
ggagttaatatagcagaagctgctgcccaaaatgtgtactgcttgaaaacagaatacatt
gctgattatctgatgcaggaatcacctccaccagtagaaaattactgtctaccagaagca
gtttcatttcttcagaataataaggaacctgggcctggattatcacagaagaggaaagct
cctacagagaaaaataaaatcaaacgacctagagtaaactaa
DBGET
integrated database retrieval system
