Vulpes lagopus (Arctic fox): 121479537
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Entry
121479537 CDS
T07435
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
vlg
Vulpes lagopus (Arctic fox)
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vlg03021
]
121479537 (SCAF4)
03041 Spliceosome [BR:
vlg03041
]
121479537 (SCAF4)
Transcription machinery [BR:
vlg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121479537 (SCAF4)
Spliceosome [BR:
vlg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
121479537 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121479537
NCBI-ProteinID:
XP_041591144
LinkDB
All DBs
Position
20:12652097..12713361
Genome browser
AA seq
1136 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSEPPQATTNSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPAQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDAAATATATATPTVAVAPPAP
TATAPTTTPAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRIMAIQQDPVHHQVPLPPN
GQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQASFQAQNEPLTQKAHQEMEVEQPCIQE
VKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRD
REKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPR
GCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIP
WDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLP
VPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPP
FLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGN
PIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQ
APSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPH
GMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQQAQPQQPPPPQPQPQQPPPAQ
QPPPAQQQPQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERR
EWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEKPEVTDRAGGNK
TVEPPISQVGNVDTVSELDKGESESAVVKPSEELPAEATSSVEPEKDSGSAAEAPR
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattcttatcactaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccagagtacaaggtt
cctggattatatgtaattgactcaattgtacgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataaccgccacattccaatatttatat
ctttgtccatctgaagataagagcaaaatagttcgtgtactgaacctttggcaaaaaaat
ggagtattcaaaattgaaattatccagcctcttttggacatggctgcaggaaccagtaat
gctgccccagtagcagaaaatgttacgaataatgaaggttcacctccacctccagttaaa
gtttcttctgaacctccccaagccactacaaactctgtaccaactgtaccacagttgcct
agctctgatgcttttgctgctgtggcccagctctttcagacgactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctccggccattgacaat
gctgtgatggcccaggtccaggctatcacagctcagttaaagacagctcctgcacagcca
cctgaacaaaaagctgctttccccccacctgagcaaaaaactgcatttgacaagaagcta
cttgatagatttgattatgatgatgagccagaagctgtggaagaatcaaagaaggaagat
gccgctgccactgccaccgccaccgccacacctactgtggcggttgctcctccagcgccc
accgccaccgcgcccaccaccacccctgccgcttcccctccacaagcaccctttgggttt
cctggagatggcatgcagcagccagcatatacacaacatcaaaatatggatcagtttcag
cctcgaattatggcaatacagcaggatccagtgcatcatcaggttccacttcctcctaat
ggacagatgccaggatttggccttcttcctacacctccatttcctcccatggctcagtct
gtgattcctccaactccacccgtgcagcagcctttccaagcttctttccaggcacaaaat
gaaccacttacacagaaggcacatcaggaaatggaagtagaacagccttgtattcaagag
gttaagcggcacatgtctgataacagaaagtcaagatctaggtcagcatccaggtcacca
aaaagaaggcgatctcggtctggctctagatctcgaaggtcccgtcatcgacgttctcga
tctcggtccagagatagacgccggcattctcctagatctcggtcccaagaaaggcgagat
agagaaaaagaaagagaacgccgacagaaagggcttcctcaaatcaaaccagaaactgcg
agtgtttgtagcactacactctgggtgggacagctggacaaaaggactactcaacaggat
gttgccagtctcttagaagagtttggtccaattgaatcaattaatatgattcctcccaga
ggttgtgcctatattgttatggttcataggcaagatgcttatcgtgccctgcagaaactg
agccgaggaaactataaagtgaaccagaagtccataaagattgcctgggctttgaacaaa
ggaataaaggcagattataagcagtattgggatgtagaactgggtgttacttatattcca
tgggacaaagtcaagcctgaagaactggagagtttttgtgaaggagggatgttggacagt
gatacacttaatccagattggaaaggaattcccaagaagcatgaaaatgaagttgctcaa
aatggaggggcagaaacctcacatacagaaccagtatcacccatacctaaacctttacca
gtgcctgtccctcctattcctgttcctgcacctataacagtgccacctccacaggtccca
ccacatcagcctggtcctcctgtagttggtgctcttcagccgcccactttcacacctcct
ttgggcattccccctcctggttttggccctggtgttcctcctccaccacctcctccacca
tttttgcgcccaggatttaatccgatgcatttgccaccaggttttcttcctcctggaccc
ccacctcctataactccaccagtatccattcctcctcctcacactccaccaataagcatc
ccaaactctactatcgctggtataaatgaagacactacaaaagacttatctattggaaat
cccattccaacagtggtgtctggggctagaggaaacgccgagtctggtgacagtgtgaaa
atgtatggctctgctgtgccacctgctgcacccacgaatctgcccacccctcctgtaacc
cagcctgtttcacttcttggtactcaaggagttgcccccggccctgtaattgggctccag
gcaccatccactggtcttcttggagcccgacctggcctgatcccacttcagcgccctcca
ggaatgcctccgcctcacttacagcgatttcccttgatgccacctcgtcccatgccacca
catatgatgcatagaggtccacctccaggacctgggggctttggaatgcctccacctcat
gggatgaaaggcccctttccacctcatggcccctttgttaggcctggcggaatgccaggg
cttgggggcccagggccaggcccagggggtcctgaagacagagacggaaggcagcaacaa
gcacagccacagcagccgccaccgccacagccacagccgcagcagccgccaccagcgcag
cagccaccaccagctcagcagcaaccacagccgtttagaaatgataacaggcagcagttc
aattcaggtagagaccaagagaggtttggaagaagatcttttggaaatagggtggaaaat
gaccgggaacggtatgggaaccgtaatgatgatagagataatagtaatcgtgaaaggaga
gagtggggaagaaggagccctgaccgggacaggcacagagacttggaagagagaaataga
cgctctagtgggcatcgagacagagagagagattctagagatagagagtctcgtagagaa
aaggaagaaaaccgaggaaaggagaagcctgaggtgacagacagggcaggtggtaacaaa
accgttgaacctcccattagccaagtgggaaatgtagacactgtttcagaacttgataag
ggggagtctgagtctgcagttgtaaaaccttctgaagagttacctgctgaggctacctca
tccgttgaacccgaaaaggattctggctcagcagcagaggctcctcgttag
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