Vulpes lagopus (Arctic fox): 121479563
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Entry
121479563 CDS
T07435
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121479563 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vlg04147
]
121479563 (COL18A1)
00535 Proteoglycans [BR:
vlg00535
]
121479563 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
vlg00536
]
121479563 (COL18A1)
Exosome [BR:
vlg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121479563 (COL18A1)
Proteoglycans [BR:
vlg00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121479563 (COL18A1)
Glycosaminoglycan binding proteins [BR:
vlg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121479563 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121479563
NCBI-ProteinID:
XP_041591187
LinkDB
All DBs
Position
20:complement(874653..949413)
Genome browser
AA seq
1717 aa
AA seq
DB search
MARHPGRCLLLLLLLTCCPAAAQVDLLSLNWLWSTRTAGPTAEPVSEAPGSPHVQPRDET
GTPVTPQPGPTEQSNAPASPEPPLRGLETDEHAASAAPSAPPTGPNPKEEKEENIAGVGA
KILNVAQGIRSFVQLWDDTTRPESSSTAGPPAPVTPTRPLALPGPSRPPPENGTALWLGS
TDAPRTEASTLPVPTRLPPSLDRPRAVLREPSGPPPSPGRASLSSAPRGAPPGGSQPSPG
PPQDLDGEGLWPGQQHRLPGLRGRSPQLLPLVMGALGADAAPSALSSDPPALLPGTPLSA
VTGGRGAWAAPAADSLGPGPANNSAPLPPAAGRCLPLPPALPVCGRLGIGRAWLPNHLQH
SSRDEVRAAARAWGGLLRTRCHRFLARFVCLLLAPPCRSGPPPAPPPCRQFCEALEDACW
SHLPGAGLPVPCASLPAQEDGLCVFIGPGAESRGSEVGLLQLLGEPPPQQVTQVDDPDVG
PAFVFGPDANSGQVARYHVPSPFFRDFSLLMHVRPATEGPGVLFAITDAAQAVVSVGVKL
SGVRDGQQHVQLLYTEPGAATTRTAASFRLPAFTGQWTRLALSVDGATVALFVDCELFQR
VPLERSPGGLQLEPGAGLFVAQAGGADPDKFQGMIAELRVRGDPHVSPLHCLEEDDEDSG
GVSGDFGSGLEDDREPSGLLPKAELPEAPPVTSPPLAGGRDVEDSRTEEIEEEATASPLG
ARTLPGSATVTTESAQRLGGSLQEAPTGPAAHNPEAWPGPGPQGPPGPPGPPGKDGTPGR
DGEPGDPGEDGRPGDPGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRH
DKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPG
VPGRDGPPGLPGVPGPPGPPGKEGGPGKPGPKGSPGDAGAPGPKGSKGDPGPVGLPGESG
LAGAPGPAGPPGPPGPPGPPGPGLAAGFVDMEGSGEPFWSTAHGASGPQGPPGLPGVKGD
PGIAGPPGAKGEVGADGPPGFPGLPGREGTAGVQGPKGEKGTQGEKGEPGRDGVGQPGLP
GPPGPPGPVVYVSEQERAAAGVPGPEGRPGHAGFPGPAGPKGDLGSKGQRGPPGPKGEKG
EPGPAFSPDGSMLAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEK
GEPGQASAGFGMRGPPGPPGPPGPPGPPGTPVYDSNAFMEPGHPGPPGLPGHQGPSGPKG
DKGDVGPPGPPGQFPFDLLQLGAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSVPGPPGP
PGYPGIPGPKGESIQGHPGPPGPQGPPGIGHEGRRGPPGPPGPPGPPGPPSFPGPYRQTI
SVPGPPGPPGPPGPPGTMGTSSGQVRIWATYQTMLDKVPDVPEGWLMFVAEREELYVRVR
NGFRKVLLEARVPLPRGTDNEVAALQPPVVQLHEGNPYPRREPTHATARPWRADDILASP
PRLPDPQPYPGAPHHGSYLHFQPARPTGGPVHTHTHQDFQPVLHLVALNSPQPGGMRGIR
GADFQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRTGVPVVNLRDEVLFPSWEALF
SGSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTDSYCETWRTEAPAATG
QASSLLAGRLLGQEAASCRRAFVVLCIENSVMTSFSK
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccaccccggccgctgcctgctgctgctgctgctgctcacctgttgccccgcg
gccgcccaggttgacctactgagcctgaactggctgtggtccactaggaccgccgggccc
acggccgaaccagtgtcggaggccccggggagcccacatgtgcagcccagagacgagacc
ggcacgcctgtgaccccccagcccggccccacggagcagagcaatgcccccgccagcccg
gagccgcccctgcgggggctggagaccgacgagcacgcggcctccgctgcaccctctgcc
ccccccacgggcccaaacccgaaggaggagaaggaggagaacatcgccggcgtgggagcc
aagatcctgaacgtggctcagggcatccggagcttcgtccagctgtgggacgacaccacg
cgcccggagagctccagcacggccgggccgcccgcccccgtgacccccacccgccccctc
gccctcccggggccctcccggccccccccggagaacgggacggctctctggctgggcagc
acagacgccccgcgcacggaggccagcaccctgccggtgcccacccggctgcccccctcc
ctggacaggccccgggcagtgctcagggagccctcggggccgccgccttctccaggtaga
gcctctctgtcctccgcgccccgtggggctcctcctggggggagccagccgtccccgggg
ccgccccaggatctggacggcgagggactctggcccggccagcagcaccgactccccggc
ctccgcgggcgctcgccgcagctgcttcccctggtgatgggtgctctgggcgcggacgcg
gccccctcggctctgtcctctgacccccccgccctgctgcctggaaccccactctcagct
gtcaccgggggcaggggcgcttgggctgctcccgccgcggactctctggggcctgggcct
gctaataactccgccccgctgccccccgccgccggccgctgcctgcccctgccgcccgcc
ctgccggtgtgcggccgcctgggcatcgggcgcgcctggctgcccaaccacctgcagcac
agcagccgcgacgaggtgcgcgccgccgcccgggcgtgggggggcctcctgcggacgcgc
tgccaccgcttcctcgcccggttcgtctgcctgctgctggccccgccctgccgctccggg
cccccgcccgcgcccccgccctgccgccagttctgcgaggccctggaggacgcgtgctgg
agccacctgcccggggccgggctgcccgtgccctgcgcctcgctccccgcccaggaggac
gggctgtgcgtgttcatagggccgggtgcagagagtcggggctcggaggtgggactcctg
cagctgctgggagagcccccgccccagcaggtcacccaggtggacgaccccgacgtgggg
ccggccttcgtcttcggcccggacgccaacagcggccaggtggcccggtaccacgtcccc
agcccgtttttccgtgacttctcgctgctcatgcacgtgcggccggccaccgagggcccg
ggggtgctgtttgccatcacggacgcggcccaggcggtggtctccgtgggtgtgaagctg
tcgggtgtgcgtgacgggcagcagcacgtccagctcctgtacacggagcccggggccgcc
acgacccgcacggccgccagcttccgcctgcctgccttcaccggccagtggacgcgcttg
gcgctcagcgtggacggcgcgacggtggcgctgttcgtggactgcgagttgttccagagg
gtgcccctggagcgctccccggggggcctgcagctggagcccggcgccggcctgttcgtg
gcccaagcgggaggagcggaccccgacaagttccaggggatgatcgcggagctgagggtg
cgcggggacccgcacgtgagccccctgcactgcctggaggaggacgacgaggacagcggc
ggggtgtctggagacttcgggagcgggctggaggacgaccgggagccgtcgggtctgctc
cccaaagccgagctccccgaggctcccccggtcacttctccgcccttggctggaggcagg
gacgtggaagattccagaacggaagaaatcgaggaagaagccacggcgtccccgttggga
gctcggaccctccccggctcggctacagtcaccacagagagcgcccaacgccttgggggc
agcctgcaggaggctcctacaggccctgcggcgcacaatcctgaagcatggccgggaccc
gggcctcagggccccccgggccccccagggccgccagggaaggatggcacccctggaagg
gacggtgagccgggggatcccggtgaggacgggaggccgggcgaccctgggccgcagggc
ttccccggaaccccgggagacgtgggccccaagggcgagaagggcgaccctggggtcggg
ccaagaggacccccaggaccccaagggcctccagggccaccaggaccctccttcagacac
gacaagctgaccttcattgacatggaggggtccgggttcggcggtgacctggagagcctc
cggggccccagaggcttccccggcccccccgggccccccggcgtcccaggcctgcccgga
gagccaggccgcttcgggatgaacagctcggacgtcccaggccccgcaggccttcctggt
gtccccgggcgggacgggccccctgggcttcccggcgtcccgggaccgccaggccctccg
gggaaagaaggaggaccagggaagcccggcccgaaaggcagccccggtgacgcgggcgcc
ccaggacctaagggaagcaagggtgaccccggccccgtcggccttccgggggagagcggc
ttggcaggagccccggggccggctggaccaccagggccccccggaccgccggggccaccg
ggaccaggactggccgcagggtttgttgacatggaaggctcgggggaacccttctggtcg
acggcgcacggagccagcgggccgcagggacctccaggcctgcccggggtcaagggggac
cctgggatagcgggaccaccgggcgccaagggagaagtcggtgcagatgggcctcccggg
ttccccggcctccctggcagagagggcacggccggagtgcagggacccaaaggagaaaaa
gggacccagggagagaaaggcgagccagggagggacggagtggggcagcctgggctccct
ggaccccccggacccccggggcccgtcgtctacgtgtcggagcaggagagagcggcggca
ggcgtgccgggacccgagggccggccgggacacgcgggctttcctggaccggccgggccg
aagggagatctgggctccaaaggccagcggggccccccagggcccaagggcgagaagggc
gagccgggcccggcgttcagccccgacggcagcatgctggcccccgcccagaagggggcc
aagggagagcccggcttccgaggccccccgggtccctacgggcggccggggcacaaggga
gagatcggcttccctgggcggccgggtcgccctgggatgaacggactgaagggggagaaa
ggggagccaggacaggccagcgccggcttcggtatgaggggtccacccggtcccccaggg
cctccggggcccccaggccctcctgggactcccgtctatgacagcaacgcattcatggag
cctggccaccccggacctccaggattgccagggcaccaggggccttctggaccaaagggt
gacaaaggagacgtgggccctccaggaccaccaggccagttccccttcgacctcctccag
ctcggggctgagatgaagggggagaagggcgaccgaggcgacgccgggcagaagggcgag
cgcggtgagcccggggggggcgggttcttcggctcaagcgtgcccggcccccccggcccc
ccgggctaccccggcatcccgggtcccaagggagagagcattcagggccatcctggcccc
cctggacctcagggcccccctggcatcggccatgaggggcgtcgggggcctcccgggccc
cccggcccccccgggcccccaggacccccttcctttcccggcccttacaggcagactatc
agtgtccccggccccccggggccccccgggccccccggcccccctggaaccatgggcaca
tcctcagggcaggtgcgcatctgggccacgtaccagacgatgctggacaaggtgccggac
gtgccagagggctggctcatgtttgtggccgagagggaggagctgtacgtccgggtccgg
aacgggttccggaaggttctgctggaggcgcgggtgccactcccacgcgggacggacaat
gaagtggccgccttgcagccccccgtggtgcagctgcacgagggcaacccatacccccgg
cgggagcccacccacgccacggcgcggccctggcgggcagatgacatcctggccagcccc
ccgcgcctgccagacccccagccctaccccggggccccgcaccacggttcctacctgcac
ttccagccggctcgccccactggcgggcccgtccacacccacacccaccaggacttccag
ccggtgctgcacctggtggccctgaacagcccgcagccgggcggcatgcgaggcatccgg
ggagcggacttccagtgcttccagcaggcgcgcgccgcggggctggccggcaccttccgg
gccttcctgtcctcgcggctgcaggacctctacagcatcgtgcgccgggccgaccgcacc
ggggtgcccgtcgtcaacctcagggacgaggtgctcttccccagctgggaggccttattc
tcgggctccgagggccagctgaagcccggggcccgcatcttctctttcgacggcagagat
gtcctgcagcaccccgcctggccccagaagagcgtgtggcacggctcggaccccagcggg
cgccgcctgaccgacagctactgcgagacgtggcggacggaggccccggcggccaccggg
caggcctcgtcgctgctggcgggcaggctgctggggcaggaggccgcgagctgccgccgc
gccttcgtggtgctctgcatcgagaacagcgtcatgacctccttctccaagtag
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integrated database retrieval system
