Vulpes lagopus (Arctic fox): 121479871
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Entry
121479871 CDS
T07435
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121479871 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vlg03041
]
121479871 (PRPF40B)
Spliceosome [BR:
vlg03041
]
Complex A
U1 snRNP components
U1 related factors
121479871 (PRPF40B)
Complex B
121479871 (PRPF40B)
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
121479871
NCBI-ProteinID:
XP_041591702
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All DBs
Position
21:40651713..40672126
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AA seq
997 aa
AA seq
DB search
MGEWMKSLSKSQTVPVVQPPPSFLLLLGNKDSTEGARLAGSRLVEESRPSQGSLGAGHGQ
ETGPGDPSSELCAPFSSSPLCFPSAKAHLFAHPGSYDFSLPQQSVPDSGPRPPAAPAPFP
PGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGIMPPMLPPMGAPPPLTQIP
GMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDK
QSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEALVKQ
EAAGKQQQQQPQILQPQPPQPQPEPPPGPPGPTPLPLGLLEPEPGGSEDCDMSEAAQPVE
QGFLQQPEEGPSSAAGQHQPPQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPS
NASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFL
EQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNI
QALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALERE
EEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLG
QPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAA
LDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVR
ERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHTKGRKHGRKGKKHHRKRSRSPSG
SESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSRLLLGSDH
GLRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKESDEKEPEQDKDRELRRAEVPNRSPG
FGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatggatgaaaagcctcagcaagagccagactgtgcctgtggtacagccgcct
ccatcttttctgttgcttttgggaaataaagacagcaccgaaggggcacggctggctggc
tctcggctggtggaagagagcagacctagccagggctcactcggagctgggcatgggcag
gaaactgggccaggagacccttcctctgaactttgtgctcctttttcatcctcaccgctc
tgcttcccttctgcaaaagcccatctctttgcccatcctgggtcctatgacttttctctc
cctcaacagtcggttcccgattctggtccccggcccccagcagcgcctgcccccttccca
ccggggccccccatgatgccaccacccttcatgccccctccaggaatccccccacccttt
cctccgatgggactgccccccatgagtcagagaccaccagccatccccccgatgccccct
ggcatcatgcccccaatgcttccaccaatgggggcaccaccaccactcacgcagatacca
ggaatggtacctcccatgatgccaggaatgctgatgccagcggtgcctgtcaccgcagcg
acggctccgggtgcggacacagccagctctgctgtggctgggacaggccctccgagggcc
ctgtggagtgagcatgtggcccctgacgggcgcatctactactacaatgctgacgacaag
cagtccgtgtgggagaagcccagcgtgctcaagtccaaggcagagttgctgctgtcccag
tgtccctggaaagagtacaagtcagacacgggcaaaccttactactataacaaccagagt
aaggagtctcgctggacccggcccaaggacttggatgacctggaggctttagtcaaacaa
gaggctgcagggaaacagcagcagcagcagccccagatactgcagccgcagccacctcag
ccccagcctgagcccccgcctgggccgcctggccccacccctctgcccctgggccttcta
gagcctgagccaggtgggagtgaagattgcgatatgtcagaggctgcccagcctgtggag
caggggtttctgcaacagccggaggagggccccagcagtgctgctggacagcatcagcca
ccacagcaggaggaagaggaatcaaagccagaaccagagaggtctggcctcagttggagc
aaccgggagaaggcaaagcaggccttcaaggagctgctgagggacaaggctgtcccctcc
aatgcctcgtgggaacaggccatgaagatggtggtcaccgacccccgttacagtgccttg
cccaaactgagtgagaaaaagcaggcattcaatgcctacaaggcgcagcgggagaaggag
gagaaggaagaggcccggctaagggccaaggaggccaagcagaccttgcagcatttcctg
gagcagcatgaacgcatgacctccaccacccgctaccggcgagcagaacagacctttggg
gagctggaggtgtgggctgtggtccctgagagggatcgaaaagaggtttatgatgatgtc
ctcttcttcctggccaagaaggagaaggaacaagccaagcagctccggcgccgcaacatc
caggccctgaagagcatcctggatgggatgagtagtgtcaacttccaaactacatggtcc
caggcccagcagtacctcatggataaccccagctttgctcaggaccaccagctgcagaac
atggacaaggaagatgcactgatctgctttgaggagcacatccgagctttggagagggag
gaggaggaggagcgggagcgggcccgccttcgggagcggcgtcagcaacgcaagaaccgg
gaggccttccagaccttcctggacgagctgcacgagacagggcagctgcactctatgtcc
acctggatggagctgtacccagcggtcagcactgatgtccgctttgccaacatgctgggc
cagccgggctccacccctctggacttgttcaagttctatgtggaagagttgaaggcacga
ttccatgatgagaagaagatcattaaggacatccttaaggaccggggcttctgcgtggag
gtgaacacagcctttgaggacttcgcccacgtcataagctttgacaagagggctgctgcg
ctggacgcaggcaacatcaagctgaccttcaatagtctgctggagaaagcagaggcacgg
gagagagagcgggagaaggaggaggcgcgaaggatgcggcgccgggaggctgccttccgg
agcatgctgaggcaggccgtgccggccctggagctgggcactgcctgggaagaggtccgt
gagcgctttgtgtgcgactcagcctttgagcagatcaccctggagtcggagcggatccgg
ctcttccgggagttcctgcaggtactggagactgaatgccagcacctccacaccaaaggc
cggaagcacggcagaaagggcaagaagcaccatcggaagcgttcccgctcgccctcaggc
tccgagtcggaagaggaggagctgcccccaccgtctctccgaccccccaagcggagaagg
cggaacccctcggagtcaggctctgagccctcgtcctcacttgattcggttgaaagtggg
ggtgctgcccttggaggacggggctccccgtcttctcgcctcctccttggatcagatcac
ggccttcggaaagccaagaaaccaaaaaagaaaactaagaagagacgacacaagtcgaac
agtcctgagagcgagacagaccccgaggagaaggctggcaaggagagtgatgagaaagaa
cccgaacaggacaaggaccgggagctccggcgggcagaagtccctaaccgttccccaggt
tttgggatcaagaaggagaagacgggctgggacacgtcagagagcgagctgagcgagggc
gagctggaaaggcggcggcggacgctcctgcagcagctggatgaccaccagtga
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