Vulpes lagopus (Arctic fox): 121480499
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Entry
121480499 CDS
T07435
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
vlg04142
Lysosome
vlg04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121480499 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121480499 (NPC1)
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
121480499 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vlg02000
]
121480499 (NPC1)
Transporters [BR:
vlg02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
121480499 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
121480499
NCBI-ProteinID:
XP_041593020
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All DBs
Position
1:complement(121293782..121346487)
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AA seq
1276 aa
AA seq
DB search
MTARRPAVGLLLLLLCPAQVFAQSCVWYGECGIASGDKRYNCQYSGPPKPLPKDGYDLMQ
ELCPGFFFDNVSVCCDVQQLRTLKDSLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQF
LNVTETEDYVDPVTNQTKTNVKELQYYVGESFANAMYNACRDVEAPSSNDKALGLLCGKE
AEACNATNWIEYMFNKDNGQAPFTIIPIFSDLPAHGMEPMNNATKGCDEPVDEVTAPCSC
QDCSVVCGPKPQPPPAPAPWRILGLDAMYVIMWITYMAFLLMFFGAFFAVWCYRKRYFVS
EYTPIDSNIAFSVNASDTGEASCCDALGAAFEGCLRRLFTQWGSFCIRNPGCIIFFSLAF
IAACSSGLVFGRVTTNPVDLWSAPGSQARLEKEYFDAHFGPFFRTEQLIIQAPHTSVHTY
QPYPSGSDVPFGPPLDIGILHQVLDLQTAIENITATYNNETVTLQDICVAPLSPYNKNCT
IMSVLNYFQNSHSMLDHKIGDDFYVYADYHTHLLYCVRAPASLNDTSLLHDPCLGTFGGP
VFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYENPNLT
ISFTTERSIEDELNRESNGDVFTVLISYAVMFLYISIALGHIKSCSRFLVDSKISLGIAG
ILIVLSSVMCSLGIFSYFGIPLTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQGETL
EQQLGRVLGEVAPSMFLSSFSEAVAFFLGALSQMPAVHTFSLFAGMAVLIDFLLQITCFV
SLLGLDLKRQEKNRLDVLCCLTGSEGGTGIQASESCLFRFFKNSYSPFLLKDWMRPIVIA
VFVGILSFSIAVLNKVEIGLDQSLSMPDDSYMMDYFKSLKYLHAGPPVYFVLEEGHDYTS
LEGQNMVCGGMGCNNDSLVQQIFSAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVYN
STDQFCNASVVDPACVRCRPLTQEGKRRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSS
AVNLVGNDTSVGATYFMTYHTVLQTSADFTDAMRKAILIANNITKTMSLKGSHYRVFPYS
VFYVFYEQYLTIIDDTIFNLSVSLGAIFLVTLVLLGCELWSAVIMCVTIAMILVNMFGVM
WLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSAKGSRVERAEEALSHMGSSVFSGI
TLTKFGGIVVLAFAKSQIFQVFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSINKAKSLA
SQERYKGTEREQLLNF
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcccgccgcccagccgtcggcctcctcctgctgctgctctgccccgcgcaggtg
tttgcacagtcctgtgtatggtatggagagtgtggaattgcatctggagacaagagatat
aactgccaatattcggggccaccaaaacccttgccaaaggatgggtatgacttaatgcag
gagctctgtccaggattcttctttgacaatgtcagcgtgtgctgtgacgtgcagcagctc
cggaccctgaaggacagcctacagcttcccctgcagttcctgtccagatgtccatcctgt
ttttataacctaatgaacctgttttgcgagctgacatgtagccctcggcaaagtcagttt
ctgaatgttacagaaactgaagattatgttgatcctgttacaaaccagacaaaaacgaac
gtaaaagaattacagtactatgtcggagagagttttgccaatgccatgtacaacgcctgc
cgggacgtggaggccccctccagtaatgacaaagccctgggactcctgtgtgggaaggag
gccgaggcctgcaatgccaccaactggatcgagtacatgttcaataaggacaacggccag
gcacctttcaccatcatacccatattttcagatcttccagcccatgggatggagcccatg
aacaatgccaccaagggctgtgacgagcctgtggacgaggtcacggcaccgtgcagttgc
caagattgctcggtggtctgtggccccaagccccagcccccacccgctccggctccctgg
agaattttgggcctggatgccatgtatgtcatcatgtggatcacctacatggcatttttg
ctcatgttttttggagcattttttgctgtgtggtgctacagaaaacgctattttgtctct
gagtacacccccattgatagcaacatagctttctctgtaaatgccagtgacacaggggag
gcatcctgctgcgatgcacttggtgcagcatttgagggctgcctgaggcggctcttcaca
cagtggggctccttctgcatccgaaacccaggctgcatcatcttcttctccctggccttc
attgctgcctgctcttcaggcctggtgttcggccgggtcacaaccaacccagtggacctg
tggtcggcccctggcagccaggcacgcctggagaaagagtactttgatgcgcacttcggg
cctttcttccgcacggagcagctcatcatccaggccccccacaccagtgtgcacacttac
cagccgtacccctcaggatccgacgtgccctttgggcccccgcttgacatagggatcttg
caccaggttctagacttacaaaccgccattgaaaacatcaccgcaacttacaacaatgag
actgtaacacttcaggacatctgtgtggccccgctctcaccctataacaagaactgcacc
attatgagcgtgttaaattacttccagaacagccattctatgctggaccacaaaataggg
gatgacttctatgtgtatgcagattaccacacgcacttgctatattgtgtacgggctcct
gcatctctgaatgataccagtttgctccatgatccttgcctgggtacatttggtgggcca
gtgttcccgtggcttgtgttaggaggctatgatgatcaaaactacaataatgctacagcc
cttgtgattacctttcctgtcaataattactacaatgatacagagaagctccagagggcc
caggcctgggaaaaagagtttattaattttgtgaaaaactacgagaatccaaatctgacc
atttctttcactactgagcgaagtattgaggatgaactgaatcgggaaagtaacggtgat
gtcttcactgttctgatcagctatgccgtcatgtttctgtacatttccatagccttgggg
cacatcaaaagctgtagcaggtttctagtggattctaaaatctcccttggcatcgctggg
atcctcattgtgttgagctcagtgatgtgctcattgggcatcttcagctactttgggatc
cccctcaccctcatcgtgatcgaagtcatcccattcctggtgttggctgttggggtagac
aacatcttcattctggtccaaacctaccagcgcgatgaacgtcttcaaggagaaactctg
gaacagcagctgggcagggtcctgggagaagtggctcctagtatgttcctgtcctccttt
tcagaggctgtagcatttttcttaggagccttgtcacagatgcccgcagtgcacactttc
tctctgtttgccgggatggcggtcctcattgacttccttcttcagattacctgttttgtg
agtctcttggggttagaccttaagcgtcaagagaaaaatcgcctggacgtcctttgctgt
ctcacaggctctgaaggtggaaccggcatccaggcctcagaaagctgcttatttcggttc
ttcaaaaactcctactccccatttctgcttaaggattggatgcggcccattgtgatagcg
gtatttgtgggcattctctcattcagtatcgcagtcctgaacaaagtggagattggattg
gatcagtctctttcaatgccagatgactcctacatgatggattatttcaagtccctcaaa
tacctgcatgcaggtccccctgtgtactttgtcctggaggaaggacacgactacacctct
ttggaagggcagaacatggtgtgcgggggcatgggctgcaataatgactccctggtgcag
cagatcttcagcgcggctcagctggacaactatacccgcataggctttgcgccctcgtcc
tggatcgacgattattttgattgggtcaagcctcagtcttcctgctgtagagtctacaac
agcacagatcagttctgcaatgcctcagtggtcgaccctgcctgcgtccgctgcaggcct
ctgacccaagagggcaaacggaggcctcagggtgaagacttcatgagattcctgcccatg
ttcctttctgataacccaaaccccaagtgcggcaaagggggacatgctgcctacagctca
gcagttaacctcgtcggcaatgacacgagtgtcggagccacttacttcatgacctaccac
accgtgcttcagacctctgctgactttactgacgccatgagaaaagccatcctcattgcc
aataacatcaccaaaaccatgagtcttaaaggaagccactaccgcgtgttcccgtacagt
gtgttctatgtcttctacgaacagtacctgaccattattgatgacacgatctttaacctc
agcgtgtcactgggagccatcttcttggtgaccttggttctcctgggctgtgaactgtgg
tctgcagtgatcatgtgtgtcaccattgccatgatcttggtcaacatgtttggcgtcatg
tggctgtggggcatcagtctgaacgcggtttccttggtcaacctggtcatgagctgtggc
atctccgtggagttctgcagccacataacgagagcgttcacagtgagtgcgaaggggagc
cgcgtggaacgggccgaagaggcgctctctcacatgggcagttctgtgttcagtggaatc
acactaacgaaatttggagggattgtggtgttggcctttgccaaatctcagattttccag
gtattttacttcaggatgtatctggctatggtcttgctgggagccacgcacggcttgata
ttcctccctgtgttactcagctacataggcccatcaataaataaagccaaaagtttggcc
tcccaagagcgatacaaaggtacagagcgagagcagctcctgaacttctag
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