Vulpes lagopus (Arctic fox): 121480539
Help
Entry
121480539 CDS
T07435
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121480539 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vlg03041
]
121480539 (SF3B1)
03036 Chromosome and associated proteins [BR:
vlg03036
]
121480539 (SF3B1)
Spliceosome [BR:
vlg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121480539 (SF3B1)
Complex B
121480539 (SF3B1)
Complex C
U2 SnRNP specific factors
121480539 (SF3B1)
Chromosome and associated proteins [BR:
vlg03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
121480539 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
121480539
NCBI-ProteinID:
XP_041593082
LinkDB
All DBs
Position
22:complement(6921801..6984414)
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaaggc
aaaaaggcagctcttgatgaagctcaaggagtgggacttgattctacaggttattatgac
caggaaatttatggtggaagtgacagccgatttgctggatacgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgatataccacaatcaacagaacag
tatgatccattcgctgagcaccgacctccaaagattgctgaccgggaggatgaatacaaa
aagcacaggcggaccatgataatatccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttaactaaagaagagagagaaattaggcaacagctagcagaaaaagctaaagctggagaa
ctaaaagttgtcaatggagcagcagcatcccaacctccctcaaaacgaaaacggcgttgg
gatcaaacggccgatcagactcctggtgccactcccaaaaagctgtcaagttgggatcaa
gcagagacccctggacataccccttccttaagatgggatgagacaccaggtcgtgcaaag
ggaagtgagactcctggagcaaccccaggctcaaaaatatgggatcctacacctagtcac
acaccagcgggagctgctactcctggacgtggggatacaccaggccatgcaacaccaggc
cacggaggcgcaacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagcggatgggctgagactcctcgaacagaccgaggtgga
gactcaattggtgaaacaccaactccgggagccagtaaaagaaagtcacgttgggatgaa
acaccagctagtcagatgggtggaagcactcctgttctgacccctggaaagacaccaatt
ggcacaccagccatgaacatggctacccctactccaggtcacataatgagtatgactcct
gaacagcttcaggcttggcggtgggaaagagaaattgatgagagaaaccgccccctttct
gatgaagaattagatgctatgttcccagaaggatataaggtacttcctcctccagctggt
tatgttcctattagaactccagctcgaaagctgacagcaactccaacacctttgggtggc
atgaccggtttccacatgcaaactgaagatagaactatgaaaagtgttaatgaccaacca
tccggaaatctcccatttttaaaacctgatgatattcagtactttgataagcttttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaataatgaagctg
cttttaaaaattaagaatggaacacctccaatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttcctctcctgatg
tctcctacactggaggatcaagagcgtcatttacttgtgaaagttattgatcgaatatta
tacaaacttgatgacttagttcgaccatatgtgcacaagatccttgtggtcattgaacca
ttgttgattgatgaagattactatgctagagtggaaggtcgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttctaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacgacagctagagcttttgctgttgtagcctctgccctgggc
attccttcattgttgcccttcttaaaagccgtgtgtaaaagcaagaagtcctggcaagcg
agacacactggtattaagattgtacagcagatagctattcttatgggctgtgccatcttg
ccacatctcagaagtttagttgaaatcatcgaacatggtcttgtggatgagcaacagaaa
gttcggaccattagcgctttggccattgctgccttggctgaagcagcaactccatatggt
atcgaatcttttgattctgtgttaaagcctctatggaagggtatccgccaacacagagga
aagggtctggctgctttcttaaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgagaatttcagtctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtgaagcagtgttgtggaacagatggt
gtagaagcaaactacattaaaacagagattcttcctcctttttttaaacacttctggcaa
cacagaatggctttggacagaagaaattaccgacagttagttgatactactgtggagttg
gcaaacaaagtaggtgcggcagaaattatatccagaattgtggatgatctgaaagatgaa
gctgaacagtacagaaaaatggtgatggagacaattgagaaaattatgggcaacttggga
gcagcagatattgatcataaacttgaagaacagctgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaatggcttcggcacagtggtcaatgct
cttggcaaacgagtcaaaccttacttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatcagcaaaagtcaggcaacaggcagctgacttgatctctcgaactgctgtt
gtcatgaagacttgtcaagaggaaaagttgatggggcacttgggtgttgttttgtatgaa
tatttgggtgaagagtaccctgaagtattgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctcctgcctagactc
acccccatcttaaagaacaggcatgaaaaagtacaagaaaattgtattgatcttgttgga
cgtattgctgacaggggagctgaatatgtgtctgcaagagaatggatgaggatttgcttt
gaacttctggagctcttaaaagctcacaaaaaagctattcgtagagccacagtcaacaca
tttggctacattgcaaaggccattggccctcatgatgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagagtttgtaccactgtagcaatagctattgtcgcc
gaaacatgttcacccttcacggtactacctgccttaatgaatgaatacagagttcctgag
ctgaatgttcaaaatggagtcttaaaatcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatatatgctgtaacaccattacttgaagatgctttaatggatagg
gatcttgtacacaggcagacggctagtgcggtggtgcaacacatgtcacttggggtttat
ggatttggttgtgaagattcactgaatcacttgttgaactatgtatggcccaatgtgttt
gagacatctccccatgtaattcaggcagttatgggagccctggagggcctgagagttgct
attggaccctgtagaatgttgcagtattgtttacagggtttgtttcacccggcccggaaa
gtcagagacgtgtattggaaaatttacaactccatctacattggttcacaggatgcgctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttataa
DBGET
integrated database retrieval system
