Vulpes lagopus (Arctic fox): 121481840
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Entry
121481840 CDS
T07435
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121481840 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vlg03041
]
121481840 (PRPF40A)
Spliceosome [BR:
vlg03041
]
Complex A
U1 snRNP components
U1 related factors
121481840 (PRPF40A)
Complex B
121481840 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
121481840
NCBI-ProteinID:
XP_041595327
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All DBs
Position
24:complement(33672859..33730835)
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AA seq
934 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ
MMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTASGAKSMWT
EHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKES
RWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTT
MSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASNTVGGTGPVVPEPEVTSIVATVVD
NENTVTISTEEQAQLTSTPAVQDQSMEVSSNTGEETAKQETVSDFTPKKEEEESQPAKKT
YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ
TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEI
YEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQL
HSMSSWMELYPTISSDIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDIL
KDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE
CQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESE
RSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKT
GKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagctgagcgtggaggcctcatgatgggccaccctggcatgcattatgccccgatgggc
atgcaccccatgggccagagagccaacatgcctcctgtacctcacggaatgatgccgcaa
atgatgccccctatgggagggccgccaatgggacaaatgcctggaatgatgtcttcagta
atgcctggaatgatgatgtctcatatgtctcaggcttctatgcagcctgccttaccgcca
ggagtaaataatatggatgtagcagcaggtacagcatctggtgcaaaatcaatgtggact
gagcataaatcacctgatggaaggacttattactataatactgaaacaaaacagtccact
tgggagaaaccggatgatctgaaaacaccggctgagcaacttttatctaaatgtccctgg
aaggaatacaaatctgactctggaaagccttactattataattctcaaactaaagaatcc
cgctgggctaaacctaaagaacttgaggatcttgaaggataccagaataccattgttgct
ggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagccgaagaaagcagtaag
caagaagagtgcaccacaacatcaacagccccggttcctacaacagaaattccgaccacc
atgagcaccatggctgctgcggaagctgctgccgctgttgttgctgcagccgcagctgct
gctgctgctgcggctgcagccaatgccagtgcttccacctctgcttcaaatactgttggt
ggaactggtccagttgttcctgagcctgaggttacttcaattgttgctaccgttgtagat
aacgagaatacagtgacaatttcaactgaagaacaagcacaacttactagtactcctgct
gttcaggatcagagtatggaagtatccagtaatactggagaagaaacagctaagcaagaa
actgtatccgattttactccaaaaaaagaagaggaggaaagccaaccagcaaaaaaaacc
tatacttggaatacaaaggaggaagcaaagcaagcatttaaagaattattgaaagaaaag
cgggtaccttctaatgcttcatgggaacaagctatgaaaatgatcattaatgacccaaga
tacagtgctttagcaaagttgagtgaaaaaaagcaggcttttaatgcttacaaagtccag
acagagaaagaagaaaaagaagaggcaagatcaaaatacaaagaggccaaggaatccttt
caacgttttcttgaaaatcatgagaaaatgacttctacaaccagatacaaaaaagcggag
caaatgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaaatc
tatgaagatgttttattctttctttcaaaaaaagaaaaggagcaagcaaagcagttacga
aagagaaattgggaagccttaaaaaatatacttgacaacatggctaatgtaacatactct
actacctggtctgaagcccaacagtatctgatggataatccaacttttgcagaagatgag
gaattacaaaacatggataaagaagatgcattaatttgctttgaagaacacatccgagct
ttagaaaaggaagaagaagaagaaaaacagaagagtttactgagagaaaggagacgacag
cggaaaaatagagaatcttttcagatatttttagatgaactgcatgaacatggacaactg
cattctatgtcatcttggatggaattgtacccaacaattagttccgacattagatttact
aatatgcttggtcagccggttttttcattaggatctactgcacttgaccttttcaagttt
tatgttgaggatcttaaagcacgttatcatgatgagaagaaaataataaaagacattcta
aaggataaaggatttgtagttgaagtaaatactactttcgaagactttgtggccataatc
agttcaactaaaagatccaccacattagatgctggaaacattaagttggctttcaacagt
ttactagaaaaggcagaagcccgtgaacgcgaacgagaaaaagaggaggctcggaagatg
aaacgaaaagaatctgcatttaagagtatgttgaaacaagctactcctccaatagaattg
gatgctgtctgggaagatatccgggagagatttgtaaaagagccagcatttgaggacata
actctagagtctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcatgaa
tgtcaacatcatcattcaaagaacaagaaacattctaaaaaatctaaaaaacatcacagg
aaacgttcccgctctagatcgggatcagattcagatgatgacgacagccattcaaagaaa
aaaagacagcgatcagagtctcggtctgcctcagaacattcttctagtgctgaatctgag
agaagttacaagaagtcaaaaaagcataagaagaaaagcaagaagaggagacataaatct
gactctccagagtcagatgctgagcgagagaaggataaaaaagaaaaagaccgagaaagt
gaaaaagatagaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagact
ggaaaggattctgggaattgggatacttctggcagtgaactgagtgaaggggaattggaa
aagcgcagaaggacccttttggagcaactggatgatgatcaataa
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