Vulpes lagopus (Arctic fox): 121482303
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Entry
121482303 CDS
T07435
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
vlg
Vulpes lagopus (Arctic fox)
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vlg04131
]
121482303 (VPS13A)
Membrane trafficking [BR:
vlg04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121482303 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Motif
Other DBs
NCBI-GeneID:
121482303
NCBI-ProteinID:
XP_041596100
LinkDB
All DBs
Position
2:complement(138246370..138479507)
Genome browser
AA seq
3171 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLTLGIWGGAVALKNLEIKENALSQLDVPFKVKVG
HIGNLNLIIPWKNLYTQPVEAVLGDIYLLIVPSSKIKYDPLKEEKQLLEAKQHELKRIEE
AKQKVADQEKHQVEKQDTFTEKLITQIIKNLQVKISNIHIRYEDDITNRDNPLSFGISLQ
NLSMQTTDQNWVPCLHDETEKLVRKLVRLDNLFAYWNVKSRLFYLNDYDESLDSLKNGIV
TDNTVPEGYDFVFRPISANAKLQMNRRSDFDFSAPKINLDVELHDIAVEFNKPQYFSVME
LLESVDMMTQNLPYRKFKPDVPLHYHAREWWSYAIHGILEVNVCPRLRMWSWKHIREHRQ
KMKKYKDLYKKKITTKKPAGEILIALEELEKTLDVFNITISRQQAEVEAKKAGYRIFREG
AKDSEENKGWFSWLWTWSEPGSKEQPDVKPGILEEMLTPEEKTLLYEAIGYSETAVDPTL
PKTFEAMKFFVHLKSMSIVLREKQETPELLDIVVEEFSTLIVQRPGAQAIKFETKIDSFH
VTGLPDNSTKPRLLSSLDDATSLFQIIFEINPLDETVAQRCIIEAEPLEMIYDARTVNSI
VEFFRPPKEVNLAQLTSVTLTKLEEFRDKTATGLLYIIETQKVLDLRINLKASYVIIPQD
GIFSPTSNLLLLDLGHLKVTSKSRLELPDMKQGGARLEEIMHRAYDSFDVQLTSIQLLYS
TVGDNWREARKLNVSTQHILVPMHFNVELSKAMVFMDIRMPKFKIFGKLPLISLRISDKK
LQGILELIESIPKPTPAPEAYAPAKPFQIQRSTSLGTSQISQKMLPFLELPCVEDDSEEE
YFDAPCSPLEEPLQSPTGVQSCQQKKIQKPDCSKNMIQYKIRFEVPEVLIQFYHLVGDCE
LPVVEIDVLGLGTDVELRTFDLKANAFLKEFCLKCPEYFDENKKPIYLVTTLDNTMEDLL
TLEYVKAEKNLPNLKSTYNNAVQLIKVNFSSLDIHLHTEALLNTINYFNNILPQLEEKSA
PVSVAETEDKGEVIKKMPLKLSKNEDIITLQILAELSCLQIFIQDQKRNISEIKIEGLDS
EIIMRPAATEINAKLRNIIVLDSDKTAVYKKAVYITGKEVFSFKMISFVDATAGSAYTDM
NVVDVQVNLTVGCIEVVFVTKFLYSILAFIDNFQAAKQALAEATVQAAGMAATGVKELAQ
RSSRMALDVNIKAPVVVIPQSPVSENVFVADFGLITMTNTFHIITESQSNPPPVIDLITI
RLSEMRLYRTQFINDTYQEVLDLLLPLNLEVIVERNLSWEWYQEVPCFNVNAQLKPMEFI
LSQEDLTTIFKTLYGNIWYEEGDGASPGGIKDQSNVNSGVTNASHHLEGTTVVTAAVVEV
HSQASQVKTTLNMSFRTDYLTMVLYSPGLEKTSFTDVRDPSLKLAEFKLENIISTAKMYT
DDSTFSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDVKYRRVRDGWVADLVLQ
ETYICASVEFLLTVANVFLEAYTTGTAVETSVQTWTAKEEVPVQESVKWEMNIIIKNPEI
VFVADMTRSDAPALVITTQCEICWKGDLENNTMTAAIKDLQVRACPFLPVKRKGKITTVL
QPCDLFYQATQVRTDPQVMDISVKSLTLKVSPVIINTVITITSALYTSKDTIPQETTSTA
HLWKKKDTKNLKMWFLEEPNEVENKAPTTELILKGEIIRMNIDSIFIVLEAGIGHRTVPM
LLAKSRFSGEGKNWSSLINLYCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGI
KMKKKTKKAIVESDTEEENYKVPEYKTVISFHSKDQLNITLSKCGLVMLNNLVKAFTEAA
TGTSTAFIRDLAPFMILNSLGLTVSVSPSDSFSVLNLPLAKSYVLKNEESLSMDYVGTKD
NDHFNAMTSLSSKLFFILLTPANHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQVDGV
EGSKKVTIRSPVQIKNHFSVPLSVYEGDILLGTASPGNEFNIPLTSYRSPLSLRPEDEDY
QACERIDFEEIIKNDGTFLKKKCRSINAAKKPFIINVVPEKDNLASLSVYSEDGWDLPYI
MHLWPPILLRNLLPYKIAYYIEGTEHKVYTLNEGHSAHICTVQLDKARLHLKLLDYLNHD
WKSEYHIKPNQQDISFINFTCVTEIEKTDLDIAIHVTYNTGQTVVAFHSPYWMVNKTGRM
LQYKADGIHRKHPPNYKKPVLFSFQPKHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAVK
CKGLKMDYQVGVTIDLSSFNITRIVTFTPFYMIENKSKYHISVTEQGNDKWLSLDLEQCI
PFWPEDASNALLIQVERHQGPPKKIHFNKQENCILLRLDNELGGIIAEVNLAEHSTVITF
SDYHDGAATFLLINHTKSDIVQYNQSSLSEIEDSLPPGKAVFYTWADPMGSRKLKWRCGK
SHGEVTQKDDMMTPINSGKKTIYLVSFFEGLQRIILFTEDPRVFKATYESEKAELAEQEI
VLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSVKHTEKLEKEFKEY
TESSPSEDKVIELDTNIPVRFTPSGTNMKILQPHVIAIRRNYLPALKLEYSTSAHQSSFR
IQIYRIQIQNQIQGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYF
KVLIQEMDLRLDLGFVYALAELMTEAEVSEKNEVELFHKDIEAFQEEYKTASLVDSSQVS
LYEYFHISPIKLHLSVSLSSGREEAKDSEKHEGLVAVHSLNLLLKSIGATLTDVQDVVFK
LAFFELNYQFHTASELQSEVIRHYSKQAIKQMYVLILGLEVLGNPFGLIREFSEGVEAFF
YEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITNAMAKGVAAMTMDEDYQQK
RREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVG
AVARPTGGIIDMASSTFQGIKRATETSDEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQ
VMENGRFAKYKYFTHVMINKTDMLMITKSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIV
HGRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPRF
NT seq
9516 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtcgtggacgtgttgaaccggttcttgggggactatgtggtg
aacctggacacgtcccagctcactctgggcatctggggaggagctgtggccttgaagaat
cttgaaattaaagaaaatgctctgagtcaactggatgttccatttaaagttaaagttggt
catataggtaatcttaatcttataattccatggaaaaacctgtatactcaaccagttgaa
gctgttctgggagacatctatttactcatagtgccttcttctaaaataaaatacgatcct
ttaaaagaagaaaaacaactcttggaagcaaaacagcatgaactgaaacgaatagaagaa
gccaaacaaaaagtagctgatcaagaaaaacatcaagtggagaaacaggacacttttaca
gaaaaattaattactcagataataaaaaatcttcaagtgaaaatttccaacatccatatt
cggtatgaagatgatatcacaaatcgagacaacccactgtcatttggtatttcccttcaa
aatctcagcatgcagacaactgatcaaaactgggttccatgtttacatgatgaaactgag
aaactagttcgtaagttagtccgattggataacctttttgcctattggaatgtgaagtct
cggctgttttaccttaatgattatgacgaatcactggacagcttgaagaatggtattgtt
actgacaatactgttccagaaggttatgattttgtgtttcgccccatatctgctaatgcc
aaacttcagatgaatcggcgatcagattttgacttttctgcccctaagataaacctggat
gttgagttacatgatatagcagttgagttcaataaaccacagtatttcagtgttatggag
cttcttgaatcagttgatatgatgacgcaaaatctgccatacaggaaattcaaacctgat
gtacctcttcactatcatgccagagaatggtggtcttatgctatacatggtattcttgaa
gtaaatgtctgcccccggttacgaatgtggtcatggaagcatattagagaacacaggcaa
aagatgaagaagtataaagacctgtataaaaaaaagataacaactaagaagccagctggt
gaaattctcatcgctttggaggagttggaaaagaccttggatgtatttaatataactata
tcaagacaacaggcagaagttgaggcaaagaaagctggatataggattttcagagaaggt
gcaaaagattcagaggaaaataaaggatggtttagttggctgtggacttggtcagaacca
ggaagtaaagaacaaccagatgttaaacctggaattcttgaagagatgttgacacctgaa
gaaaaaactttactctatgaagcaattggctatagtgaaacagcagttgatcccaccttg
ccaaaaacatttgaagccatgaagttttttgttcacttgaaaagcatgtctattgttcta
agagaaaaacaagagacacctgagctgttggatattgtagtagaagaatttagcactttg
attgtgcaaagaccaggagcacaagccattaaatttgaaaccaaaattgattcatttcat
gttactggcttgccagataattcaacaaaacctcgcctcctatcttcattggatgatgct
acttcactcttccaaattatatttgagataaatccgttagatgaaactgttgctcaaagg
tgtatcatagaagctgaacctttagaaatgatatatgatgcaagaacagtgaatagtata
gtggaattcttcaggcctccaaaagaggtaaatctagcacagctcacatcagtgactttg
acaaaacttgaagaatttcgtgacaagacagcaacaggactgctgtacattattgaaaca
cagaaagttcttgatctcagaattaatctgaaggcttcctatgttattatcccacaagat
ggaatttttagtcctacatcaaatctgcttcttttagatcttggtcatctaaaggtgaca
agtaaaagtcgtttggaattgccagatatgaaacaaggaggagccaggcttgaagagatc
atgcatagagcttatgattcctttgacgttcagcttacaagcatacagctgctttacagc
acagttggtgataattggagagaagcgcgaaaattgaatgtatctacacagcatattttg
gtacctatgcacttcaatgtggaactctctaaggccatggttttcatggatataagaatg
cccaaattcaagatttttggaaagttaccactgatttctttacgaatctcagataaaaaa
ctgcaaggaattttggaattgattgaaagcattccgaaacccacacctgcacctgaagca
tatgcccctgccaaaccatttcagattcaaaggtccacttctttgggaacatcacagatt
tcacagaaaatgcttcctttcttggagcttccatgtgttgaagatgattctgaagaagaa
tattttgatgcaccttgtagtcctttggaagagcctcttcagtctcccactggagttcaa
agttgtcagcagaaaaagattcaaaagccagattgttcaaaaaatatgattcagtataaa
ataagatttgaagtgccagaggttttgattcagttttatcaccttgttggagattgtgaa
ttacctgtggtagaaattgatgttttaggattgggcacagatgttgaacttagaacattt
gatttgaaagcaaatgcctttttgaaagagttctgcctaaaatgcccagaatactttgat
gaaaacaagaaaccaatttatttggttacaacactggataatacgatggaagatctgcta
acattggaatatgtgaaggctgaaaagaatctgcctaacttgaaaagtacttataacaat
gctgtacaactgattaaggtgaatttttcctctttggatattcatttacataccgaagca
cttctgaatacaataaattattttaataatatacttccacagttggaagaaaaatcagcc
ccagtgtctgttgcagagactgaagacaaaggagaggtcattaaaaaaatgcctttaaaa
ctatcaaagaatgaagatattattaccttgcaaattttagcagaattatcttgtttacag
atctttattcaagatcagaaacgtaacatttctgaaattaagattgaagggcttgattct
gagatcattatgaggcctgcagcaactgaaataaatgcaaaactaaggaatatcattgtt
ttggattctgataaaacagctgtatacaaaaaggctgtttacatcactggaaaagaagtg
tttagcttcaaaatgatttcttttgtggatgcaactgctggttctgcatacacagatatg
aatgtggttgatgttcaagttaacttaactgttggttgcattgaagtagtttttgtcaca
aaatttctatactctatattggcttttatagataattttcaagcggctaaacaggctttg
gctgaggctactgttcaagcagcaggaatggctgctactggtgtaaaagaattggcacag
aggagttctagaatggcattggatgttaacatcaaagccccagtggtagtcatcccacag
tctccagtttctgaaaatgtttttgttgctgattttggactaattacaatgacaaacaca
ttccatataataacagagagccagagcaaccccccaccagttattgatttgataacaata
aggctgagtgaaatgcgactatacaggactcaatttattaatgatacataccaggaagta
ctagatctgctactgccattaaatcttgaggtgattgttgagcggaatttatcttgggag
tggtaccaggaagttccttgttttaacgtaaatgctcagttaaagcccatggagttcatt
cttagtcaagaagatttaacaactatttttaaaacattatatggcaatatatggtacgaa
gaaggtgatggtgcctcacctggaggaataaaagatcagagtaatgttaatagtggagtt
actaatgcttcacaccatttagaaggaacaactgtagtgactgctgctgtggtagaagta
cattcacaggcctctcaagttaagacaacactgaatatgagcttcagaacggactatctc
accatggtactgtatagtccaggtcttgaaaagacttcctttacagatgttcgtgatcct
tctctgaaacttgctgaatttaagttggagaatatcataagcactgcaaaaatgtataca
gatgactcaacattttcttccttctcattaaaaaattgtattttagatgataaaaggcct
catgtcaagaaggcaactcctagaatgataggactgacagttggttttgacaaaaaggac
atgatggatgtaaagtataggagagtcagagatggttgggtggctgatttagtccttcaa
gaaacgtatatttgtgcaagtgtggaatttctgctgacagttgcaaatgtctttcttgag
gcctacaccacaggcactgctgtagaaaccagtgttcaaacatggactgctaaggaagaa
gtacctgtacaagaatcagtaaagtgggaaatgaatattattattaaaaatcctgaaatt
gtgtttgtggctgatatgacaagaagtgatgctcctgccttagtcattacaacacagtgt
gaaatttgttggaaaggtgaccttgagaataatacaatgactgctgccattaaagatctt
caagtgagagcctgcccatttcttccagtcaagagaaaaggcaaaatcactactgttttg
cagccctgtgatttgttctatcaagctactcaagtacgtacagatccacaagtgatggat
atatcagtaaaatccctcacactaaaggtttcaccagtcatcataaatactgtgattacc
ataacatcagcactttatacatccaaggacaccatcccacaggaaactacttctacagca
catttatggaagaagaaggatacaaagaatttaaaaatgtggtttcttgaagaaccaaat
gaagttgaaaacaaagctcccacaactgaattgatacttaaaggagagatcataagaatg
aacattgattctatctttatagttcttgaggctggaattggtcatagaacagtgcctatg
ctgctggcaaagtcacgtttttcaggggaaggcaaaaactggagttccttgataaatctc
tactgtcagcttgaactagaagtacattattacaatgaaatgttcggtgtatgggagcct
ttgcttgaacccttagaaattgatcagactgaggattttagaccatggaatcttggaatc
aagatgaaaaagaaaacaaaaaaggccattgttgagtcagatactgaagaagaaaattac
aaagtgccagaatataaaaccgttatcagtttccattcaaaagaccaactaaacattaca
ttatccaaatgtggccttgtaatgttgaataatttagtcaaggcatttacagaagctgcc
actggaacctcaactgccttcatacgggatctagcaccatttatgattttgaattctctt
ggacttactgtctctgtttcaccaagtgattcttttagtgtactcaacctcccattggca
aaatcatacgtattgaaaaatgaggagagtttaagtatggactacgtgggaactaaagac
aatgatcatttcaatgcaatgaccagcctaagcagtaaacttttcttcattcttcttaca
cctgccaaccactctactgctgataaaattcctttaacaaaagtgggacggcgactgtac
actgtaagacacagagagtctggggttgaaagatcaattgtttgtcaagttgatggagtg
gaaggaagtaagaaggtaacaattcgctccccagtgcagataaaaaatcatttttcagtc
ccactttctgtttatgaaggggacattttgttgggaacggcctcacctggaaatgaattc
aacataccattaacatcttaccgatcacccctttctctgaggccagaagatgaggactat
caagcatgtgaaagaattgactttgaagaaattataaaaaatgatggcacttttctaaaa
aagaaatgtagatctataaatgctgctaaaaaaccatttatcattaatgttgtcccagaa
aaagataatttggcttctctgtcagtgtattcagaagatggttgggatttaccatacata
atgcatttgtggccacctatcctgcttcgaaatcttcttccttacaaaattgcttactat
atagagggcactgaacataaagtttatactctaaatgaaggacattcagcccatatttgt
actgtgcagttggataaagccagactacatttaaaattacttgactatcttaatcatgat
tggaaaagtgaatatcatataaaacctaatcagcaagatattagtttcatcaattttacc
tgtgttacagaaatagaaaagactgatttagatattgctatccatgtgacttacaatact
ggccagacagttgtggcatttcatagtccttactggatggtcaataaaactggtcgaatg
ttacagtataaagcagatggaattcatcgaaagcatccacctaattataaaaagccagtt
ctcttttcttttcaaccaaagcacttttttaataataataaggttcagctgatggtaact
gatagtgaattgtcagatcagttttcgattgatactgttggtagtcatggagctgttaaa
tgtaaaggcctgaaaatggactatcaagttggtgtcactatagacctcagcagttttaac
attaccaggattgtgacatttacccctttttatatgatagaaaacaaaagcaagtatcat
atatcagtgactgaacagggaaatgataagtggctctctcttgatttggagcagtgtatc
cccttttggcctgaggatgcttctaatgcacttcttattcaagttgaaagacatcaaggc
cctcccaaaaagatacattttaacaagcaagaaaattgtattttattgcgcctggataat
gagcttggaggtattatagcagaagttaatttggctgaacattctacagttattacattt
tcagattatcatgatggagcagctacattcctattaataaatcacaccaagagtgacatt
gttcagtacaatcaaagttctctcagtgaaatagaagattccctccctcctggaaaagca
gtattttatacatgggctgatccaatgggctctagaaagctgaagtggagatgtggaaaa
agccatggtgaagtaacacaaaaggatgatatgatgacacctataaattctgggaaaaag
accatttatttagtttcattctttgaaggcttacaacgcattattttattcactgaagat
ccaagggtatttaaagcaacatatgaaagtgagaaagcagagttagcggagcaagaaatt
gtgttggccttacaagatgttggaatttctctcgtcaacaattacacaaagcaagaagta
gcctatattggcattacaagttctgatgtggtttgggagacaaagcccaagaagaaggca
agatggaagccaatgagtgtaaagcacactgagaagttagagaaagaatttaaggaatat
actgaatcttcaccttcagaagataaggttattgaattggacactaacattccggttcgc
ttcacacctagtggtactaatatgaaaattctgcaaccacatgtaatagctatacgaaga
aattatcttccagcattaaaactagaatatagcacatctgcacatcagtcatcatttaga
attcaaatttatagaatacagatccaaaaccagatacaaggtgctatatttccatttgtg
ttttatccaattaaacctcccaagtcagtcaccatggattcagctccaaagccctttaca
gatgtcagtattgtcatgagatctgctgggcattcccagatatcacgtattaagtacttc
aaagtgttgatccaagaaatggatctcagattagatcttgggtttgtttatgctttagca
gaacttatgacagaagctgaagtgagtgaaaaaaatgaggttgaactttttcataaagat
atagaagctttccaagaagaatataaaacagcttcattagtagattcatcacaagttagt
ctctatgaatatttccatatatctcctatcaagttgcatttaagtgtttcactgagttcg
ggcagagaagaagccaaagattcagaaaaacacgaaggactggtggctgttcattcttta
aatcttttgctgaagagtatcggtgccactcttacagacgtccaagatgtagtttttaag
cttgcattttttgaactcaactatcagttccatacagcttctgaactacagtctgaagta
ataagacactattcaaaacaggccattaagcaaatgtatgtactcattcttggacttgaa
gttttgggaaatccctttggcttgattagagaattttctgaaggtgtggaagcatttttt
tatgaaccttaccagggagccatccagggtcctgaagagtttgtggaggggatggcgcta
ggactgaaggcgctggttggtggagctgtcggtggattagctggtgctgcctccaaaatc
actaatgctatggctaaaggggtggcagctatgactatggatgaagactaccaacagaag
agaagagaagcaatgaataagcaaccagctggtcttagagaaggcatcactcgtggagga
aaaggcttagtttctggttttgtaagtggcataacaggaattgttacaaaaccaatcaaa
ggagctcaaaaagaaggagcagctggtttctttaaaggtgttgggaaaggtttagttgga
gcagtggcaaggccaactggaggcatcatagacatggccagcagtacatttcagggaata
aaaagagctacagagacttctgatgaagtggagagcctgcgaccccctcgattctttaat
gaggatggagttatcagaccttacaggttgagggatgggactggaaaccagatgttacag
gtcatggaaaatggaagatttgcaaaatacaagtattttacccatgtcatgatcaataaa
acagatatgttaatgataactaaaagtggtgtattgtttgtaacaaaaggaacatttgga
cagcttacatgtgagtggcagtatagttttgatgaatttaccaaagagccattcattgtt
catgggagaagattacgcattgaagcaaaggaacgggtgaagtctgtgtttcatgccaaa
gagtttggaaaaataattaacttcaagaccccagaggacgctaggtggatcctcacaaaa
ctagaagaagcaagagaaccttccccgagattctga
DBGET
integrated database retrieval system
