Vulpes lagopus (Arctic fox): 121483038
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Entry
121483038 CDS
T07435
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
vlg
Vulpes lagopus (Arctic fox)
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vlg03021
]
121483038 (SCAF8)
03041 Spliceosome [BR:
vlg03041
]
121483038 (SCAF8)
Transcription machinery [BR:
vlg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121483038 (SCAF8)
Spliceosome [BR:
vlg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
121483038 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121483038
NCBI-ProteinID:
XP_041597187
LinkDB
All DBs
Position
2:101694124..101917999
Genome browser
AA seq
1291 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQLQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQGVAFNKKLMDRFDFGEDSEHSEEP
KKEISASQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPTIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVASNLATPTLPAGNVFNP
PTKQAEPEEKVPHLIEHQISSGENTRSVIPNDIPSSSAILGGQPPNVTSNSGILGVQRPN
VSSNSEIIGVRPSNVSNSSGIIGPQPPNILNNSGILGLQPPTVSSSSGLLGVLPPNIPNN
SGLIGVQPPNVPNAAGLLGTQPPAGPQNLPPLNLSSQRMPAMPMLDIRPGLIPQTPGPRF
PLMQPGIPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPERPFLVPGRQSVDNVPNPEK
RIPLGNDNIQQEGDRDYRFPPIEARESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDH
FGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRDFDEREHRVLPVYGGPKGLHEER
GRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGR
DRIQNTWVPPPHARVFDFFEGATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEKL
TSSSEINKEKSDTVADIESEPVVESTETEGT
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaagaccttcaatagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctgaatgactacaaacca
cccatttctaaagcaaaaatgacccaaattactaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagcgttgagaaattcattcagaaatgtaaaccagaatacaag
gtacctggactttatgttattgactccattgtacgacaatctcgacatcagtttggtcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgccctggggatgacaagagtaaaatagtgagagtattaaatctatggcagaag
aataatgtgtttaagagtgagattattcagcctcttttggatatggcagccgggatacct
cccccagttgttacacctgttttggccagtactactgcagctatgagcaacaccccagga
actcctgttacacctgttactccagccaatgtggtccagggtttaccggatccatgggta
tctcagataacaaacacagatacacttgcagcagtagctcaaatcctacaaagtcctcaa
ggccaacagcttcagcagttgatacagactttacaactacaacaacaaaagcctcagcct
tctattctgcaggccctggatgctggtcttgttgtgcagttgcaggctctcacagcacag
cttactgctgcagctgcagcggccaacaccctgaaccccttagaacagggagtggctttc
aacaagaagttgatggataggtttgattttggggaagattctgagcatagcgaagaacct
aaaaaggaaatttcagcttctcaactttctcatgtttcagaatctgtgaacaattccatt
tttcatcagatagcagaacaactacaacagcaaaaccttgaacatctcagacagcaactc
ctagaacagcaacagcctcaaaaggcaacccctcaggatagtcaagagggaacatttgga
tcagagcattccgcatcaccatcacaagggagcagtcaacagcatttccttgaacctgaa
gcaaatttggatgattctatagatattcaacaacaggatatggatatagatgaaggacaa
gatggagtagaagaggagatctttgagcaggaagcaaagaaagtggctgttcgctcaaga
tcaagaacacattcacgatctcgttcaagatcaccaagaaaacgaaggtctcggtcacga
tctggttctcgaaagcgtaaacacagaaagcgatcacgctcacgctcaagagaaagaaag
aggaaatcatcacgttcgtactcaagtgaaaggagagcaagagaaagggagaaagaacga
cagaagaagggattacctccaattagatctaaaacattaagtgtatgtagtactactttg
tgggttggtcaggtggataagaaggcaactcagcaagatttaaccaatctgtttgaagag
tttggacaaattgaatccattaatatgattcctcccaggggctgtgcttacgtctgcatg
gttcatcgacaagatgcttttcgggctcttcagaaacttagttccggatcatataaaatt
gggtccaaggtcattaagattgcttgggctttaaacaaaggtgtaaaaacagaatataaa
caattctgggatgtggatcttggagttacatatataccgtgggaaaaagttaaagtggat
gatttggaaggttttgcagaaggaggcatgattgaccaggaaactgtaaatactgagtgg
gaaactgtgaaaagctcggaacctgttaaagagacagtccagacaactcagagcccaact
ccggttgaaaaggagacagtggtcacaacccaggcagaggtttttcctccacctgttgcc
atgttacagattccagtagcgccagctgtgcctgcagttagtttagtcccaccagcattt
cctgtctccatgccagttcctcctcctggattcagtccaatccctccacctccttttctg
agagcaagttttaacccttcacaaccacctcctggtttcatgccacctccagttccacca
cctgttgtaccaccacctactattccaccagtagtaccaacatctttagtgcagccacca
ttatccatgactccagaaactgtgaaagatgttggatttggtagtcttgttttaccgggt
ggttctgttgccagcaatcttgctactcccactctgccagctggaaatgtttttaatcct
ccaactaaacaagcagagcctgaagaaaaagtacctcatcttatagagcaccagatttca
tctggtgaaaacacaagatcagtgattccaaatgatattccaagtagctccgcaatttta
ggaggacagccgccaaatgtgacaagcaattctggaattctgggagtccaaagaccaaat
gtatcgagtaattctgaaattattggagtccggccatctaatgtttccaatagttctggg
attattggaccccagccaccaaatattctgaataactctggaattttgggactacagcca
ccaactgtgtcaagtagttctggacttttgggagtgctacccccaaatatccctaataat
tccggacttataggagtacagccaccgaatgttccaaacgctgctggacttttgggaaca
caaccaccagctgggcctcaaaacttaccccctttaaatctctctagtcaaaggatgccc
gcaatgccaatgttagacattcgtccaggactaataccacagacacctggaccaagattc
cctttaatgcagcctggaattccaccccaacggggaatccctcccccatcagtacttgat
tcagctcttcatccaccaccccgtggtccttttcctccaggagatatttttagtcagcca
gaaagaccttttctagtccctggaagacaaagtgtagacaatgttcctaatccagagaaa
aggataccacttggaaatgataacattcaacaggaaggagatagagattaccggtttcct
cccattgaagccagggaaagcattagtagacctcccccggtggatgttagggatgtggtt
ggacggcctatagatccaagagaaggtcctggaaggcctccattagatggtagggatcat
tttggaagacctcctgtcgatattagagagaatcttgtgaggccaggcatagatcatctt
ggtcgaagagaccattttggctttaatccagagaagccctgggggcatagagattttgat
gagagagaacatcgggttctacctgtctatggtggtccaaaaggcttacatgaagaaaga
ggtagatttcgatctggaaactatcgatttgatcctagaagtggtccttggaacagagga
tttggacaagaagttcacagagattttgatgaccgcagaagaccctgggagcggcaaagg
gatagggatgacagagattttgatttctgcagagaaattaatggaaaccgtcttggacga
gatagaattcaaaacacctgggtcccccctcctcatgctcgggtttttgatttttttgaa
ggggccacttctcaacgaaaaggtgataacgtgcctcaggttaatggtgaaaatactgaa
agacatgcccaaccaccacctttaccagtgcagaatgatcctgaactttatgaaaaactg
acatcttcaagtgaaataaacaaggagaagagtgacacagttgctgatatagaaagtgaa
ccagtggtagaaagcacagaaactgaggggacataa
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