Vulpes lagopus (Arctic fox): 121484078
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Entry
121484078 CDS
T07435
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121484078 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlg03019
]
121484078 (PNLDC1)
Enzymes [BR:
vlg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121484078 (PNLDC1)
Messenger RNA biogenesis [BR:
vlg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121484078 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
121484078
NCBI-ProteinID:
XP_041598684
LinkDB
All DBs
Position
2:106214045..106233083
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AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRHS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWRVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEVQLVLRQALPDIWTVLRDQGIIVKKVSKQHRWYLENTSCDRESCWKE
KILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPI
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVVIHASKCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWRVHSAGPVPEPSFSLYLDVLAPYVNQVNLIRAGVPKIN
FSGPDCPSIRPPILLLRVRRWPGVSEQQVYREFQNVCKFDVRRLSRSQFLLLTNKFKDAR
SILKEYRGHPTLQVSLYRYWRHSPNINCLLQVCGVVTTWALLALLLGRPGP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctccctctgctgcaggagctggtcctg
ggcgctgacttcgtgggtctggacatcgagttcacgggccttcgctccaacctgtcccgg
ccccagcagatcagtctttttgacttgccctcggagtggtatctgaagacccgccacagt
gttcagcagttcaccatctgtcagattggattgtccgtgttttccagtattgaaggagag
tcaaacaagtatgtagcccattcatgtaacttctttctcttccctacgacatttgggatt
ttggattccgaattctctttccaggcttctagtgttcagtttctgaatcagtatggcttc
gactataacaagtttctcaaaaatgggatcccctatatgaatgaagagcaggagaagaaa
atcaaacacaacatcctgactgggaactggagagttcgcagttctctggataaagaccag
atcaaggtggtgattgatgaggtgacacggtggctggatttggctgaggagggcgactgg
atgactctccccggtatcgctggcttccaggcctttgaggtccagttggtgctgaggcag
gccctccctgacatctggacggtcctgagagaccaggggataatagttaaaaaagtgagt
aaacaacatcgctggtatcttgagaacacctcctgtgatcgagagagctgttggaaggag
aagattcttctctctgcgaggggcttctcggtgtttttccagatgctggtgaaagcccag
aagcccctagtgggccacaacatgatgatggacctgctgcatctccacgagaagttcttc
aggccgctcccagaaagctatgatcaatttaagttgaatatccacaacctatttcccatt
ctcattgacaccaagaatgtgaccaaggacatctggaaggagctgaattttccaagagtt
tcaaacctttcagaagtttatgaagtcctaaacagtgacttgaatcctaccaaaaattct
gggccagtggttattcatgcaagcaagtgtgaaaaatacgttgagaccaagtacccccac
gaggctgcctatgacgccttcctctgtggatcagttcttctgaaagtggcacacttgctc
ctatggagagtacacagtgccggtcccgtgcctgagccctccttttctctctaccttgac
gtgctggctccctatgtgaaccaggtgaatcttatccgagctggggttcctaagattaac
ttttctggtccagattgccccagtatccggcctcccatcctcctcctgcgtgttcgtagg
tggcctggggtcagcgagcagcaagtctatcgtgagtttcagaatgtctgcaagtttgat
gtgcggcgcctctcacggagccagttcctgctcttgaccaataagtttaaggatgctcgg
agcatcctgaaggagtacaggggccaccccaccctgcaggtctccctgtaccgatactgg
agacactccccgaacatcaactgcttgttacaggtctgcggtgtggtcactacctgggct
ctcctggcgcttctcctcggaagacctggcccctga
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