Vulpes lagopus (Arctic fox): 121485071
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Entry
121485071 CDS
T07435
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
vlg
Vulpes lagopus (Arctic fox)
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vlg03009
]
121485071 (PDCD11)
Ribosome biogenesis [BR:
vlg03009
]
Eukaryotic type
90S particles
Other 90S particles
121485071 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Spt6_S1
HAT_Syf1_CNRKL1_C
OB_RRP5
Suf
OB_RRP5_4th
TPR_14
TPR_19
ARM_TT21
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
NRDE-2
UTP6_C
DUF2110
DUF7017
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
121485071
NCBI-ProteinID:
XP_041601024
LinkDB
All DBs
Position
2:complement(25497140..25541789)
Genome browser
AA seq
1870 aa
AA seq
DB search
MEESFPRGGTRKTHKLEKAFQQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKIEKRE
SSKSVRDKFEVLSVESLREGIRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQL
NEQVAQEEPLKDLVCLSELFSPGMLVRCVVSSVGITERGKKSVKLSLNPKNVNEVLSAEA
LKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCII
EEVKGNGGVVGLSIVPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTF
FTGLVDFMHLDPKKAGTYFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLTRLSCQH
LGAVLDDVPVQSFFSKAGATFRLKDGALAYARLSHLSDSKNVFNAEAYKPGNIHKCRIID
YSQMDEMALLSLRPSIIEAQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPM
HLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGL
QTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSK
ERMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLP
TPHLSDHVANGPLLYHWLQAGDTLHRVLCLNQSEGRVLLCRKPALVSTVEGGQDPKNFAE
IHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTN
VDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTP
GMVLDLEVQEVLEDGSVVFSEGPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKLE
VHVSLCHDLVNRKPKKLKKGSEHQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRF
DSEKLQVGQGVSLTLKTTEPGMTGFLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVV
GAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVG
RTVTARVIGGRDMKTFKFLPISHPRFIRTIPELSVRPSELKKDGCTALDTHSSSHLEKIK
QYQTGQTLICFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALK
ATVVGPDSSRAFLCLSLIGPHKLEKGEVAMGRVVKVTPKEGLTVSFPFGKIGKVSVFHVS
DSYSETPLEDFVPQKIVRCYVLSATGHLLTLSLRSSRTNPETKSKITDPEINSIQDIQEG
QLLRGYVKSVQPHGVLFGLGPSVVGLVQYPHVSQYSPSKKTLYNRYLPEGKLLTAKVLSL
KCQKNLVELSFLPNDTGKPDVFPASLGLPLLKQEERTVEAEENKHKGEEKEEKNQKRKGK
RNQEGQEGVQLPGEEKKEPQKLQAKKQGKRRRRESAGEQERVNKKQKKAAPSEEDDSGVE
VYYREGEEEVEEMSVLPKEKPSRPAEVPRLQLSSGFIWDVGLDSLTPALPPRGESSDSEE
DDKPQQSTQKKSKKERMLEKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSIL
WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVF
ERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQA
GASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVY
IDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY
VEAKSSVLED
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagcttcccccgagggggtacgagaaagacccacaaattagagaaagctttc
cagcagtcagttgaacaagacaatttatttgatatttctactgaagaggaatccaccaaa
aggaaaaagagccagaaagggccagcaaaaacaaaaaagttgaaaatcgagaagagagaa
agcagcaagtctgtaagagataagtttgaagtccttagtgttgagtccctgcgtgagggg
atacggattttgggttgtgtgaaggaggtacatgaactagaactggttatcagtctgccc
aatggcctccagggctttgtgcaagcaacagaaatctgtgatgcctataccgagcagctg
aatgagcaggtagctcaagaagaacctctgaaggacctggtctgcttgtctgaactcttc
tcacctgggatgctagtgagatgtgtggtgagcagtgtgggcatcacagagaggggcaaa
aagagtgtcaagctatctctgaaccccaaaaatgtcaacgaagtgctaagtgctgaggcc
ctgaagcctggcatgctgctcacaggcactgtgtccagcttggaagaccatggctaccta
gtggacattggtgttagtggggccagagcctttctgccattacagaaagcccaggagtat
atccgacagaagaacaaaggtgcgaaactgaaggtgggtcagtacctgaactgcatcatt
gaagaagtgaaaggcaatggaggagttgttggtctgtctattgttccttctgaagtttct
gctgccattgctactgaggagcaaaactggacccttaataacttgctaccaggactggtc
gtcaaagctcaggtacagaaggtaactccagttggccttacactaaacttcctcacattc
ttcactggcctggtcgacttcatgcacctagatcccaagaaagctggaacatatttctca
aatcaagcagtaagagcctgtgttctctgtgtccatcctcggaccagggccgtgcggctg
agcctgcgccccgtcttcctgcagcctgggcgctcactcacccggctctcctgccagcac
ctgggagctgtgctggatgacgttcccgtgcagagctttttcagcaaggctggggccacc
ttcaggctgaaggatggggcactggcctatgctcggctcagccatctctccgattctaag
aatgtcttcaacgctgaggcctacaaaccagggaacattcacaagtgtagaatcattgat
tacagccaaatggatgagatggcgttgctctctctgaggccgtctattattgaagctcag
tactttagatatcatgacatcaaacctggggcattagtaaagggcacagtgctgaccata
gagccatatgggatgctggtgaaggtgggtgagcaaatcagaggcttgatacctcccatg
cacctggctgacatcctgataaagaatccagagaagaagtaccacattggggatgaggtc
aagtgccgggttttgctttgtgatcctgaagccaaaaagctgatgatgaccctgaagaaa
accctgattgagtctaaactgcctgccattacctgctatgctgatgccaagcctggtctg
cagacgcacggcttcatcctccgggtcaaggactatgggtgcattgtgaagttctacaac
gatgtgcagggactggtgcccaagcatgagctcagtgccgagtatgtccctgacccagag
agggtcttttacactggccaggtggtgaaggttgtagtgctgaactgtgagccgtccaaa
gagaggatgcttttgtccttcaagctgttgggtgatccaaagaaagagcatacgggacac
agtcagaagaaaagaagagccattagtgttggacagttggtggatgtgaaggttttagag
aagaccaaagatgggctggaagtgtctgtcctgccccataacatccctgctttcctcccc
acacctcatctgtcggaccacgttgccaatggccctctgttgtatcactggctccaggct
ggcgacacccttcacagagtactttgtctgaaccagagtgagggacgtgttctcctttgt
aggaagccagctttggtctccacagtggagggtggccaagatcctaagaacttcgcagaa
atccatcctgggatgctgctcatcggttttgtgaagagcatcaaggactatggtgtgttc
gtccagttcccgtcaggtctcagtggactggcccctaaagctatcatgagtgataagttt
gtgacttctacaagtgaccactttgttgaggggcagacagtggttgcaaaggtgaccaac
gtggatgaggagaagcagcgcatgctgctctcgctacggctgtcagactgcggtctaggg
gacctggctaccaccagcctcctcctcctgagccagtgcctggaagagcggcagggtgtg
cgcagcctcatgagcaaccgagactctgtgttgatccagacgctggctgagatgacccca
gggatggtccttgacctagaggtgcaggaggtgttggaggatggctctgtggtgttcagt
gagggcccggtgtctggcctggtcctgagggccagcaaatatcatcgagcagggcaagag
gtggagcctgggcagaaaaagaaagttgtcatcctaaatgttgatatgttgaagttggaa
gtacatgtttccctttgtcatgatttggtgaatagaaaacctaaaaagctgaagaaaggc
agtgagcaccaggcaattgtgcagcacttggaggagtcctttgctgtcgcctccttggta
gagactggccacctggcagctttctccctgacctctcacctcaatgacaccttccgcttt
gactcagagaagttgcaagtgggacagggtgtctccctaaccctcaagaccacagaaccg
ggaatgactggttttcttttggccgttgaggggccagctgctaagaggactgtgagacag
acccggaaggactccgagacagttgatgaagatgaggaagcagatccagctctggttgtg
ggggctgtaaagaagcacaccctatccattggggacatggtcacaggcactgtcaagtct
attaagcccacccacgtggttgtgaccctggaagatggcatcattggctgtattcatgcc
tcccacattctagatgatgttccagtgggcacatctcctactgccaagttgaaagttggg
aggacagtcactgcccgagtgattggtgggagagatatgaagacgttcaagtttcttcca
ataagtcatcccagatttattcgaaccattccggagctgagtgtccggccaagtgagctg
aagaaagatggctgcactgctctcgacactcactcttctagccacttggagaagattaaa
cagtaccagactgggcagactttgatttgcttcttgaagaagtacaatgtggttaagaaa
tggcttgaggtggagattgctccagatatccggggcaggattcccttgttgcttacttct
ctcagcttcaaggttctgaaacatccagataagaagttccggattggccaggccctgaag
gctactgtggttggcccagattcgtccagagccttcttatgtctctcacttataggtccg
cacaagcttgaaaaaggggaagtggccatgggccgcgtggtgaaggtgactcctaaggag
gggctgactgtctccttcccctttgggaagataggaaaagtcagtgtatttcacgtgagt
gactcctactcagagacgcccctggaagactttgtcccccagaagattgtcaggtgttat
gtcctgtctgctacaggccacttgttgactctgtcactacgatcatccaggacaaaccca
gagacaaagagcaaaataactgatcctgagattaactccatccaggacattcaggaaggg
caactcctgaggggctatgtgaagtctgtccagccacatggtgtgctctttggccttggc
ccctctgttgtgggtttggtccaatacccacatgtctcccagtacagtccttccaagaaa
accctttataacagatacctcccagaagggaagctgctcaccgccaaggttctgagcctg
aagtgtcagaagaacctagtagagctgtcattcctccccaatgacactgggaagccagat
gtgtttcctgcctccctgggactgccactactaaaacaagaggagaggacagtggaggca
gaggagaacaagcacaaaggagaagagaaggaagaaaagaatcagaaaaggaaagggaag
aggaaccaagaggggcaggagggggtgcagctgcctggtgaggagaagaaagagccccag
aaactgcaagcaaaaaagcagggcaagcggcggcgccgggagtctgcaggtgaacaggaa
agagtgaacaagaagcaaaagaaagctgctccatcagaggaggacgacagtggtgttgaa
gtgtattatcgggaaggagaagaggaggtggaagagatgagtgtactgcctaaggagaag
ccgagcaggccagcagaagtgccccggctacagctgtcctctggtttcatttgggacgtg
gggctagactctctgaccccagccttaccacctcgaggagagagctcagacagcgaggag
gacgacaagccacagcagtccacgcaaaagaaaagcaagaaggaaaggatgttggagaag
cagaaggcagagaaagagttgtcccgcattgaggaggcgctgatggatcctgggcgacag
ccagagtcagcagatgactttgaccgactcttgctgagttcccctaacagctctattctg
tggctgcagtacatggccttccacctgcaggccacagaaatcgagaaggcccgggctgtg
gccgagagggctctcaagaccatttccttcagagaggagcaagagaaactgaacgtgtgg
gtggcactgctgaatctagagaacatgtatggctctcaggagtcgctgaccaaggtcttc
gagcgcgctgtgcagtacaatgagcctctcaaggtctttctccacctggctgacatctac
aacaagtcagagaaattccaggaagctggtgaactctacaaccggatgctgaagcgattc
aggcaggagaaagctgtctggatcaaatatggtgcctttcttctgcggaggggccaggct
ggagccagtcaccgtgtgatgcagcgagcccttgagtgtctgcccaataaagagcatgtg
gatgtgattgccaagtttgcccagctggagttccagctgggagatgcggaacgggccaaa
gccatttttgagaatacactgagcacctacccaaagcgtactgatgtctggtcggtttac
attgacatgaccattaagcatggcagccagaaggaagtccgggacatctttgaacgggtt
attcatctcagcctggcccccaagcgaatgaaattcttcttcaagcgctacctggactac
gagaaacaacatggcactgagaaggacgtgcaggcagtaaaagcgaaggccctggaatac
gtggaagctaagagctctgtgttggaggactag
DBGET
integrated database retrieval system
