Vulpes lagopus (Arctic fox): 121489071
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Entry
121489071 CDS
T07435
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg05016
Huntington disease
vlg05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
121489071 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
121489071 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlg03019
]
121489071 (HTT)
04131 Membrane trafficking [BR:
vlg04131
]
121489071 (HTT)
03029 Mitochondrial biogenesis [BR:
vlg03029
]
121489071 (HTT)
Messenger RNA biogenesis [BR:
vlg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121489071 (HTT)
Membrane trafficking [BR:
vlg04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121489071 (HTT)
Mitochondrial biogenesis [BR:
vlg03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
121489071 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
121489071
NCBI-ProteinID:
XP_041607472
LinkDB
All DBs
Position
4:complement(121336590..121480313)
Genome browser
AA seq
3129 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQPPPPPPPQPPQPLPQAQPPLPQPPPPPPPPPPPG
PAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSD
DAESDVRMVADECLNRVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLV
RPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIA
NLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEGEHSTLLILGVLLT
LRYLVPLLQQQVKDTSLKGSFGVTRKELEVSPSTEQLIQVYELTLHYTQHQDHNAVTGAL
ELLQQLFRTPPPELLQALSTPGGGLLNATQQQPGCRSRSSSIVELLAGGGSSCSPVLSRK
QKGKVLFGEAAALDDDSESRSEGSSPAFTASVKGEIGGELAASSGVSTPGSASSATDSVG
HDIITEQPRSQHTLQPDSVDLTSCDLASAATDGDEEDILSHSSSQISAVPSDPAMDLNDG
TQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYSGMQIGQPQDEDEEAAGILPD
EDADAFRTSSVALQQAHLLKSMGHSRQPSDSSIDKFVSRDEVTEPGDQENKPCRIKGDIG
QSTDDDSVPLVHCVRLLCASFLLTGEKNVLVPDRDVRVSVKALALSCVGAAVALHPESFF
SKLYKVPLDTMEYPEEQYVSDILNYIDHGDPQVRGATAVLCGTLISSILSRSRFQVGDWM
GTVRTLTGSTFSLADCVPLLQKTLKDESSVTCKLACTAVRHCVMSLCSSSYSELGLQLIT
NVLTLRDSSYWLVRTELLETLAEIDFRLVSFLETKAENLHRGTHHYTGLLKLQERVLHDV
VIYLLGDEDPRVRHVAAAALMRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHEAQP
PSHFSVSTITRIYRGYNLLPSMTDVTVENNLSRVIAAVSRELVTSTTRALTFGCCEALCL
LSTAFPVCIWSLGWHCGVPPLSTSDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDALV
LAGNLLAASAPKSLRSSWTSEEEANPAASKQEEVWPALGDRTLVPMVEQLFSHLLKVINI
CAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEPASVPLSPKKGSEASPASR
QSDAPGPVTANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSAL
DVLSQILELATLQDIGKCVEEILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFDGL
SSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRTMVQTEQDYGTSGWF
DVLQKVSTQLKTNLTSATKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDL
LAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHS
KQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVV
VSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMLAKQQMHIDSHEAL
GVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMASVSTVQLWISGILAILRVLISQSTEDI
VLSRIQELSFSPYLISCPIINRLRDGDSTSIPEEHHEGKQMKTLPEETFSRFLLQLVGIL
LEDIVTKQLKIEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAASRLFTVDSTDGS
FYGLERLNARVRAMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPRRRSLSSTKSLSP
QMSGEEEDPDAACKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLINLS
HEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHFSQSGAVLTL
YVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQSGMAQLPVEEVSRVQEYLQRSGLAQR
HQRLYSLLDRLRLATAPGSRGPSPPVTSHPLDGDGPLALEIVIPDKDWYLRLVKSQCWTR
SDSALLEGAELVNRIPPSDMSTFMMNSEFNLSLLAPCLGLGMREISGGQRSPLFETARLV
TLDRVTSLVQQLPAVHHVFQPFLPMEPTAYWSKLNDLFGDAVLYRSLTTLARALAQYLLV
FSKLPSHLHLPPEKERDTVKFVVMTLEALAWHLIHEQIPLSLDLQAGLDCCCLALQLPSL
WSVLSSPEMVTHACSLIHCVRFILEAVVVQPGDQLLSPERRVNMPKAARVDEVDPNTQNL
AYITTACQMVAEMVESLPSVLALGHKRNSNTPAFLTSVLRNIVISLARLPLVNSYTRVPP
LVWKLGWSPEPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINALGWTSRTQFEETWATLLG
VLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRN
KPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVPSLSPATTGALIS
HDKLLLQINPERELGNMSYKLGQVSIHSVWLGNSITPLREEEWEEEEEEEADVPAPASPP
TSPINSRKHRAGVDIHSCSQFLLELYSRWILPSGSARRTPIILISEVVRSLLVVSDLFTE
RTQFEMMYLTLTELRRVHPAEDEILIQYLVPATCKAAAVLGMDKAVAEPVSRLLETTLRS
SHLPSKVGALHGALYVLECDLLDETAKQLVPVISDYLLSNLKGAAHCVNIHSQQHVLVMC
ATAFYLIENYPLDVGPEFSASIIQMCGVMLSGSEESTPSIIYHCVLRGLERLLLSEQLCR
LDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPSPTAPDSESVIV
AMERVSVLFDRVRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMA
TVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMAVWSLSCFFVSASTSPWVSAVL
PHVISRMGKLEQVDVNLFCLVATDFYKHQIEEELDRRAFQSVFEVVAAPGNPYHRLLTCL
RNVHKVTTC
NT seq
9390 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcaagtccttccagcagcag
cagcaacagcagcagcagcctccgccgccgccacctcctcagcctcctcagccgctgccg
caggcgcagccgccgctgccgcagccgcccccgccgcccccgcccccgccgcccccgggc
ccggcggtggccgaggagccgctgcaccgaccaaagaaagaactctcagctaccaagaag
gaccgtgtcaatcattgtctgacaatatgtgaaaacatagtggcacagtcactcagaaat
tctccagaatttcagaaacttctgggcatcgctatggaactttttctgctgtgcagtgat
gatgcagagtcggatgtccggatggtggctgacgagtgcctcaacagagtcataaaagcc
ctgatggactctaatcttccgaggttacagttagaactctataaagaaatcaaaaagaac
ggtgctccccggagcctgcgcgctgccctgtggaggtttgctgagctggctcacctggtt
cggcctcagaaatgcaggccttacttggtaaaccttttgccttgcctgactcgaataagc
aagagacctgaggaatctgttcaggagaccttggctgcagctgtacccaaaattatggct
tcttttggcaattttgcaaatgacaatgaaattaaggttctattaaaggctttcatagcg
aatctgaagtcaagctccccgaccattcgacggacagcagctggctcagcagtgagcatc
tgccagcactcaagaaggacacagtatttttacagctggctactaaatgtgcttttaggt
ttgctggtccctgttgagggtgaacactctaccctcctgattcttggagtgctgctcaca
ctgaggtatctggtgcctttactgcagcagcaggttaaggacacgagcctgaaaggcagc
tttggagtgacacggaaagaactggaagtctctccctcaacagagcagctcatccaggtt
tatgaactgaccttgcattatactcagcaccaagaccacaacgctgtgactggagcgctg
gagctcctgcagcagctattccgcacgcccccgcccgagctcctgcaggctctgagcaca
cccggtggcgggctgctcaatgccacgcagcagcagcctgggtgccggagccgcagcagc
agcatcgtggagctcctagctggagggggttcttcatgcagccctgtcctttcaagaaaa
caaaaagggaaagtgctcttcggagaagcggcagccttggatgatgactccgagtccagg
tcggagggcagcagccccgccttcacagcctcggtcaagggtgagattggtggtgagctg
gctgcctcttccggggtctctactcctggctctgccagttcagccaccgactccgtgggg
catgacatcatcaccgagcagccccggtcacagcacacactgcagccagactcagtggat
ctgaccagctgtgacctggcgagtgctgccaccgatggggatgaggaggacatcttgagc
cacagctccagccagatcagtgctgtcccgtcggatccagccatggacctgaacgatggc
acccaggcctcctccccggtcagcgacagctcccagaccaccactgaagggccggattca
gctgtgaccccctcagacagttctgaaattgtgttagatggtgctgacagccagtattcg
gggatgcagattggacagccacaggacgaggatgaggaagccgcaggcattcttccagat
gaggatgcagatgctttcagaacctcttcagttgcccttcagcaagcacatttattgaaa
agcatgggccacagcagacagccctctgacagcagtatagacaaatttgtctccagagat
gaagttaccgaaccaggagatcaagaaaacaagccttgccggatcaaaggtgacatagga
cagtctaccgatgatgattctgttcctcttgtccattgtgtccgcctcctgtgtgcatca
tttttgctgactggggaaaaaaatgttttggttccagacagggacgtgcgggtcagtgtg
aaggcactggcactcagctgtgttggagctgctgtggcccttcatcctgaatctttcttc
agcaaactttataaagtacctcttgacaccatggaataccctgaggagcagtatgtgtca
gacatcctgaactacatcgaccacggagacccccaagtcagaggagccacggccgttctc
tgcggaaccctcatctcctctatcctcagcagatcccgcttccaggtgggagattggatg
ggcaccgtcaggaccctgacaggaagtacattttctctggcggactgtgttcctttgctg
cagaaaactttgaaggatgaatcttctgttacttgcaagttggcttgtacagctgtgagg
cactgtgtcatgagtctctgcagcagtagctatagtgaattgggattacagctgatcacc
aacgtgctgaccctgagggatagttcctactggttggtgaggacagagctcttggaaact
cttgcagagattgactttcggttggtgagctttttggagacaaaagcagaaaacctgcac
agagggactcatcattacacagggctcttaaaactacaagaacgagtgctccatgatgtt
gtcatctatctgcttggggatgaggaccccagagtgcggcatgttgctgcagcggcatta
atgaggcttgtcccaaagctgttttataagtgcgaccaaggacaagctgaccccgtggtg
gctgtggcgcgagatcaaagcagtgtttacctgaagctcctcatgcacgaggcgcagcct
ccatctcacttctccgtcagcaccataaccagaatctacagaggctataacttactaccg
agcatgacagacgtcactgtggaaaacaacctctccagagtcattgcagcagtttcccgc
gaattggtcacgtcaaccacacgcgcgctcacatttggatgctgcgaagctctgtgtctc
ctttcaactgcctttcctgtctgcatttggagtttaggttggcattgtggggtgcctcca
ctaagcacctcagatgagtctagaaagagctgtactgttggcatggccacgatgatcctc
accttgctctcatctgcttggttcccactggatctctctgcccatcaggatgctttggtt
ttagccggaaacttacttgcagccagtgcccccaaatctctgagaagttcatggacctct
gaagaggaggccaacccagcagcctccaagcaggaagaggtctggccagctttgggtgac
cggaccctggtgcccatggtggagcagctcttctcccacttgctgaaggtgattaacatc
tgtgctcacgtcttggacgatgtggctcccggaccagcaataaaggcagccttgccatct
ctgacaaaccctccttccctaagtcccatccgacggaagggaaaggagaaagaacctgga
gagccagcctctgtgcccttgagccccaagaaaggcagcgaagccagtccagcctctcga
caatctgatgccccaggacctgttacagcaaataagtcctcgtcgttggggagtttctgt
caccttccttcatatctcaaattgcacgatgtcctgaaagctactcacgccaactataag
gttaccttggatcttcagaacagcactgaaaagtttgggggctttctgcgctctgccttg
gatgttctctctcagatcctggagctggccacgctgcaggacatcggaaagtgtgtggag
gagatcctagggtatctgaaatcctgtttcagtcgagaaccagtgatggcaactgtttgt
gttcagcagttgttgaagactctctttgggacaaacttggcctcccagtttgatggctta
tcttccaaccccagcaagtctcaaggccgagcacagcgtctgggctcgtccagcgtgagg
ccaggcttgtatcattactgtttcatggctccatacacccacttcacccaggccttagcc
gatgccagcttgaggaccatggtgcagacggagcaggactacggcacctcagggtggttt
gatgtgcttcagaaggtgtctacgcagttgaagaccaacctcacgagtgccactaagaac
cgtgcagataagaatgctattcataatcacatacgtttgttcgagcctctggttataaaa
gctttaaaacagtacacaaccacaacgtctgtgcagctgcagaggcaggttttagacttg
ctggcacagctggttcagttacgggtcaattactgtcttctggactccgatcaggtgttt
attggatttgtgctgaagcagtttgagtacattgaagtaggccagttcagggaatcagag
gcaattattccaaacatctttttcttcctggtattactatcttatgaacgctatcattca
aaacagatcattggaattcctaaaatcattcagctctgtgatggcatcatggccagtggg
aggaaggctgtgacacatgccataccggccctgcagcccatagtccatgatctctttgta
ctgagaggaaccaataaagccgatgcaggaaaagagcttgaaacccaaaaagaggtggtg
gtgtcaatgttactgagactcatccagtaccatcaggtgctggagatgttcatcctggtc
ctacagcagtgccacaaggagaatgaagataagtggaagcgactgtctcggcagatagca
gatgtcatcctcccgatgttagccaagcagcagatgcacattgattctcatgaagccctt
ggagtgttaaatactttatttgagatcctggctccttcttccctccgtcctgtggacatg
cttttacgaagtatgttcgtcactccagatacaatggcatctgtgagcactgtccaactg
tggatatcaggaatcctagccattttgagagttctaatttcccagtcaactgaagatatt
gttctttctcgtattcaggagctctccttctccccatatttaatttcctgtccaataatt
aataggttaagagatggggatagtacttcaataccagaagaacaccatgaagggaaacaa
atgaagactttgccagaggaaacattttcaaggtttctcctacaactagttggcattctt
ttggaggatattgttacaaagcagctaaaaatagaaatgagtgaacagcaacatactttc
tattgtcaagaactaggcaccctgctcatgtgtctgatccacatcttcaagtctggaatg
ttccggagaatcacagcagctgcctctagactcttcacggtagacagcaccgacggcagt
ttctatggcctagagaggctgaacgcccgggtgcgtgccatggtgcccacacatccagcc
ctcgtgctgctctggtgccagatcctgctgctcgtcagccacaccgactaccgctggtgg
gcggaggtgcagcagacccccaggagacgcagtctgtccagtaccaagtcactcagcccc
cagatgtctggagaagaggaggatcctgatgcagcatgcaagcttgggatgtgcaataga
gaaatagtacgaaggggagctctcattctcttctgcgattatgtctgtcaaaacctacac
gattcagagcacctaacgtggctcatcgtgaatcatatccaggacctgatcaatctgtcc
catgagcctcccgtgcaggattttattagtgctgttcatcggaactctgctgccagtggc
cttttcatccaggcaattcagtctcgttgtgaaaatctttccacccctaccactctgaag
aagacgcttcagtgcttggaagggatccacttcagccagtcgggtgccgtgttaacccta
tatgtggacaagcttttgtgcactccgttccgtgtgctggctcgcatggtcgacactcta
gcctgtcgccgggtggaaatgcttctggctgcaaatttacagagtggcatggcccagctg
ccagtggaggaagtgagcagagtccaggagtacctgcagcgtagcgggctggcccagaga
caccaaaggctctactccctgctggacaggctgcgtcttgccactgcaccgggctcacgt
ggcccttcacctccagttacctcccacccgctggacggggatgggcccctggcactagag
atagtgattccagataaagactggtacctacgtctagtcaaatcccagtgctggactagg
tcagattctgcgctgctggaaggggcagaactggtgaatcggattcctcccagtgacatg
agtacattcatgatgaactcggaattcaacttaagtctgttggctccatgcctgggcctg
ggcatgcgcgaaatctccggaggccagaggagtcccctttttgaaacagctcgcctggtg
acactggaccgcgtgaccagcctggtccagcagctccctgctgtccatcatgtgttccag
ccattcctgcctatggagcccactgcctactggagcaagttgaacgatctatttggggat
gccgtgttgtatcggtccttgaccactctggcccgggccctagcccaatacctgctggtg
ttctccaaactgcccagccatttgcacctacctcctgagaaggagagggacactgtgaag
tttgtggtcatgacccttgaggccctggcatggcatttgatccatgagcagatcccactg
agtctggaccttcaggcaggcctcgactgctgttgcctggctctgcagctgcccagcctc
tggagtgtgctctcctccccagagatggtgacccacgcctgctctctcattcactgtgtc
cgcttcatcctagaagccgtcgtggtgcagcctggggaccagctgcttagcccagaaagg
agggtgaacatgccaaaggccgccagagtggacgaagtagatccaaacacacaaaatcta
gcatatatcaccacagcctgtcagatggtggcagaaatggtggagtctttgccatcagtg
ttggccttggggcacaagaggaacagcaacaccccagcgtttctcacgtcagtgctgagg
aacatcgtcatcagcctggctcgcttacccctcgtcaatagctacacgcgtgtccccccg
ctggtttggaaactcggatggtcgcctgagccaggaggggactttggcacagccttcccc
gagatcccagtggagttcctccaggagaaggaagtctttaaagagttcatctaccgcatc
aatgcactaggatggaccagccgcacccagtttgaggaaacgtgggccaccctccttggt
gtcctggtgactcagccccttgtgatggagcaggaagagagcccaccggaagaagacaca
gagaggacccagatcaacgtcctggctgtgcaggccatcacctccctggtgctgagtgca
atgactgtgcctgtggctggcaacccagctgtgagctgcttggagcagcagccccggaac
aagcccctgaaagccctcgacaccaggtttgggaggaagttgagcattatccgaggaatt
gtagagcaggaaatccaagcaatggtttcaaagagagagaatatcgccacgcatcactta
taccaagcgtgggaccctgtcccttctctgtctccagctactacaggtgccctcataagc
cacgacaagcttctgctgcagatcaaccccgagcgggagctgggaaacatgagctataag
cttggccaggtgtccattcactccgtgtggctggggaacagcatcacacccttgagagag
gaggagtgggaggaggaggaagaagaggaggctgatgtccctgcacctgcatcaccaccc
acatcacccatcaactccaggaagcaccgggctggagtcgacattcactcctgttcccag
tttttgcttgaattgtacagtcgctggatcctgccgtcaggttcggccagaaggacaccc
atcatcctgatcagtgaagtggttcgatctctcctcgtggtctcagacttattcactgag
cgcacccagtttgagatgatgtatctgacgctgacggaactgcggagggtgcaccctgca
gaagacgagattctcattcagtacctggtgcccgccacctgcaaggcagctgccgtcctt
ggaatggacaaggccgtggcagagccagtcagccggctgctagagaccacactgaggagc
agccaccttcccagcaaggtcggagccctgcacggcgctctctacgtgctggagtgtgac
ctcctggatgagacagcgaagcagctcgtcccagtaatcagcgactacctcttgtccaac
ctcaaaggggcggcccactgtgtgaacattcatagccagcagcacgtgctggtgatgtgc
gccactgccttttacctgatcgagaactaccccctggatgtaggcccggaattctctgca
tcaataatacagatgtgtggggtgatgctgtctggaagtgaggagtccaccccgtctatc
atctaccactgtgtcctgcggggtctggagcgcctcctgctctctgaacaactctgccgg
ctagatgcagagtccctggtcaagcttagtgtggacagagtgaacgtgcacagcccacat
cgggccatggctgccctgggcctgatgcttacctgcatgtacacagggaaggagaaaatc
agcccgggcagaacctcagaccccagccccaccgccccagacagcgagtcagtgattgtg
gctatggagcgtgtgtctgtactttttgacagggtcaggaaagggttcccctgtgaagcc
agagtggtggcacggatccttcctcagtttttagatgacttcttcccaccccaggacgtc
atgaacaaagtcattggagaatttctgtccaaccagcagccgtacccgcagttcatggcc
acagttgtatataaggttttccagactctgcacagcaccgggcagtcgtccatggtccga
gactgggtcatgctgtccttgtccaacttcacacaaaggacgccagtggccatggccgtg
tggagcctctcctgcttctttgtcagtgcttccaccagcccgtgggtctcggcggtcctt
ccccacgttatcagcaggatgggcaagctggaacaagtggacgttaacctcttctgcctg
gtggccacggacttttacaaacaccagatagaggaggagctggaccgccgggccttccag
tctgtgttcgaggtggtcgcggcaccaggaaacccgtatcatcgattgctgacttgtttg
cggaatgtccacaaagtcaccacgtgctga
DBGET
integrated database retrieval system
