Vulpes lagopus (Arctic fox): 121489133
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Entry
121489133 CDS
T07435
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121489133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlg03019
]
121489133
03036 Chromosome and associated proteins [BR:
vlg03036
]
121489133
Enzymes [BR:
vlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121489133
Messenger RNA biogenesis [BR:
vlg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121489133
mRNA degradation factors
5'-3' decay
Decapping complex
121489133
Chromosome and associated proteins [BR:
vlg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121489133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
121489133
NCBI-ProteinID:
XP_041607622
LinkDB
All DBs
Position
4:120451649..120453994
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AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLFSQNGQLRGPVKPSGGPGEGGTQTQQQMNQLKNTNTINNGTQQQAQ
SMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKPELPMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPXLEWLDLKKDNIQAMVIVPTRELALQA
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLMKKGVAKVDHV
QTIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQPIIFCNSSQRVEXLAKKISQLGYS
CFYIHAKMRQEHRNRVFYDFLYGLCHNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIRPIPSNIDKSLYVAEYHSEPVED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtcttttcagtcaaaatggtcag
ctgagaggccctgtgaagcccagtggtggccccggagaagggggcacacagacacagcaa
cagatgaaccagctgaaaaataccaacacaatcaataatggcactcagcagcaagcacag
agtatgaccaccactataaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaacgagtttgaagat
tactgtttgaaaccggagttaccgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaagagcggtgcctacctcattccctaacttgaatggctagacctg
aagaaggacaatatacaagcaatggtgattgttcctactagagaacttgctctacaggcc
agtcaaatttgcatccaggtcagcaagcacatgggaggggccaaagtgatggcaaccaca
ggaggaaccaatttacgggatgacataatgaggcttgatgacacagtgcacgtggtgata
gctacccctggaagaatcctggatcttatgaagaaaggagtagcaaaagttgatcatgtc
cagacgatagtattggatgaggcagataagttgctgtcacaggattttgtgcagataatg
gaggatattattctcacactacctaaaaacagacagattttattatattctgctactttc
cctcttagtgtacagaagttcatgaattcccatttgcagaaaccctatgagattaacctg
atggaggaactaactttgaagggagtaacccagtactacgcctatgtaactgagcgccaa
aaagtacactgcctcaacacacttttttccaggcttcagataaaccagccgatcattttc
tgtaactcctctcagcgagttgaatagctagccaagaagatttctcaactgggttattct
tgcttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtattttatgatttc
ctatatggcttatgccacaatcttgtttgcactgatttgtttacccgaggtattgatata
caagctgtgaatgtggtaataaactttgacttcccaaagctggcagagacctatctccat
cgtattggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatat
gatgatcgcttcaacttgaaaagtattgaggagcagctgggaacagaaattagaccgatc
ccaagcaacattgacaagagcctgtatgtggcggaataccacagcgagcccgtggaggac
gagaagccctaa
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