Vulpes lagopus (Arctic fox): 121490534
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Entry
121490534 CDS
T07435
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg01524
Platinum drug resistance
vlg03430
Mismatch repair
vlg05200
Pathways in cancer
vlg05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121490534 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
121490534 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
121490534 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
121490534 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vlg03400
]
121490534 (MSH6)
DNA repair and recombination proteins [BR:
vlg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121490534 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Imm30
WPP
Motif
Other DBs
NCBI-GeneID:
121490534
NCBI-ProteinID:
XP_041610219
LinkDB
All DBs
Position
5:33712778..33736866
Genome browser
AA seq
1361 aa
AA seq
DB search
MSRQSTLYSFFPKSPALSNANKASARASGEGGGAAAAGASPSPGGDAAWSEAEPGPGPLA
GRASPPEARNINGGLRRAAAPAAPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
REKGKSVRIHVQFFDDSPTRGWVSRRLLKPYTGSKSKEVQKGGHFYSSKPEILRAMQRAD
EALNKDKIERLELAVCDEPSEPEEEEEMEVGATHSSEKSEEDHEIESEEEVRPKVQGSRR
SSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVASKR
KKMVTGNGSLKRKSSRKEMPPATKRSTGISSETKSALNAYSAPQNSESQAHIGGGCDDSS
RPTIWYHETLEWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQN
FDLIIFYKVGKFYELYHMDALTGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKV
ARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLL
SLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGN
LSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEEYFKEKLNEDSGVMLPQVLK
GMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYVPLDSDMVSAT
RPGAVFAKANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA
PLCSPYAINDRLDAIEDLMVVPDKISDVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDS
RAIMYEETTYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKSKILRQVITLQTKNPEG
RFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRS
RIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLIN
AEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVIL
LPEEGTPPFLDLRGSRHPCIMKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRK
AREFEKMTQSLRLFREVCLASERSTVDAEAVPKLLTLIKEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctctacagcttcttccccaagtctccagcgctgagtaatgcc
aacaaggcctcggccagggcctcaggtgaaggcggcggcgccgctgccgccggggcctcc
ccttctcccggcggggatgcggcctggagcgaggccgaacctgggcctgggccgctggct
ggccgcgcgtctccgccggaggcgaggaacatcaacggagggctgcggagggctgctgcg
cctgcggcccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaagatg
gagggttatccctggtggccttgcctggtttacaaccacccttttgatggaacattcatc
cgtgagaaagggaagtctgtccgaattcatgtacagttttttgatgacagcccaacaagg
ggctgggttagcagaaggctattaaagccatacacagggtcaaaatcaaaggaagtacaa
aagggaggtcatttttacagttcaaagcctgaaatactcagagcaatgcaacgtgcagat
gaagccttgaataaagacaagattgagaggcttgaattggctgtgtgtgatgagccctca
gaaccagaggaagaagaagagatggaggtaggtgcaactcattcatcagaaaagagtgaa
gaagaccatgaaattgaaagtgaagaagaagtaaggcctaaggtccaaggatctaggcga
agtagccgccaaataaaaaaacgaagggtcatatcagactctgagagtgacattggtggc
tctgatgtggaatttaagccagatgctaaggaggaaggaagcagtgatgaaataagcagt
ggagtaggggatagtgacagtgaaggcctagacagcccggtcaaagttgcttcaaagcgg
aagaaaatggtgactggaaatggctctctcaaaaggaaaagttcaaggaaggaaatgccc
ccggccaccaaacgatcaactggcatttcatcggaaaccaagagtgctttgaatgcttac
tctgcccctcaaaattctgaatctcaagcccacattggtgggggatgtgatgatagtagt
cgccccactatctggtatcatgaaactttagaatggcttaaggaggaaaagagaagagat
ctgcataggaggcgacctgatcaccctgattttgatgcatccacactctatgtgcctgag
gatttccttaattcctgtactcctgggatgaggaagtggtggcagatcaagtctcagaac
tttgatctgattatattttataaggtggggaagttttatgagctgtaccacatggatgct
cttactggagtcaatgaactagggctggtattcatgaaaggcaactgggctcattctggt
ttccctgaaattgcatttggccgatactctgattctctggttcagaagggctataaagta
gcacgagtggaacagactgagaccccagaaatgatggaggcacgatgccggaagatggca
catatatctaagtatgacagagtggtgaggagggagatctgtagagtcattaccaagggt
acacagacctacagtgtattggaaggtgacccctctgagaactacagtaagtatcttctt
agcctcaaagaaaaagaggaggattcttctggccacactcgggtgtatggagtatgtttt
gttgatacctcactgggaaagtttttcataggtcagttttcagacgatcgccattgttcc
aggtttaggactctagtggcacactatcctccagtacaagtcttgtttgagaaaggaaat
ctctcaacagaaactaagatgattctgaagggttcattatcctcctctcttcaggaaggt
ctcataccaggctcccagttttgggatgcagccaaaactttgagaactctccttgaagaa
gaatattttaaggaaaagttaaatgaggacagtggggtgatgttaccccaggtgcttaaa
ggtatgacctcagagtctgattctcttgggctgacaccaggagagaagagtgaattggcc
ctttctgctctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaagagctc
ttatcaatggctaattttgaagaatatgttcccttggattctgacatggtcagtgctaca
agacctggtgctgtttttgctaaagccaatcaacgaatggtgctagatgctgtgacatta
agcaacttggagattttcatgaatggaacaaatggttctactgaagggaccctcctagag
aagattgatacttgccatactccctttggtaagcggcttctaaagcagtggctttgtgcc
ccactctgtagcccttatgctatcaacgatcgtctagatgctatagaagacctcatggtt
gtgcctgacaaaatctctgatgtggcggaccttttaaagaagcttccagacctcgagagg
ctactgagtaaaattcataatgttgggtctcccttgaagagccagaaccacccagatagc
agagctataatgtacgaagagactacatacagcaaaaaaaagattattgattttctttct
gctctagaaggattcaaagtaatatgtaaaattatagagatcatggaagaagtcgtggac
aactttaagtctaaaatccttaggcaggttattactctgcagacaaaaaatcctgagggc
cgttttcctgatttgactgtagaattgaaccgatgggatacagcctttgatcatgaaaag
gctcgaaagactggactaattactcccaaagcaggatttgactctgattatgaccaagct
cttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgcagt
cgaattggctgcaggaccattgtctactgggggattggtaggaaccgttatcagttggaa
attccagagaatttcatcactcgtaatttgccagaagaatatgagttgaaatctaccaag
aagggctgtaaacgatactggaccaaaactattgaaaagaagttggctaatctgataaat
gctgaagaacggagagacgtatcattgaaggactgtatgaggcgactattttataacttt
gataaaaattacaaggactggcagtctgctgttgagtgcatcgcagtattagatgtctta
ctgtgcctggctaactacagtcaagggagtgatggccctatgtgtcgtccagtaattttg
ttgccagaagaaggcactcctcccttcttagaccttagaggatcacgtcatccctgcatt
atgaagactttttttggagatgactttatacccaatgacattctaataggctgtgaggaa
gaggaggaggaaaatggcaaagcttattgtgtgcttgttactggacctaacatggggggc
aagtctacactcatgagacaggctggcctattagctgtaatggcccagatgggttgttat
gtacctgctgaagtgtgtaggctcacaccaattgatagagtatttactagacttggtgcc
tcagacagaataatgtcaggcgaaagtacattttttgttgaattgagtgaaactgccagc
atacttacgcatgcaaccgcacattctctggtgcttgtggatgaattagggagaggtact
gcaacattcgatggaacagcaatagcaaatgcagttgttaaagaacttgctgagaacata
aagtgtcgtacattgttttctacccactaccattcgttagtagaagattattctcaaaat
gttgcagtgcgcctgggccacatggcatgcatggtagaaaatgaatgtgaggatcctagc
caggagactattaccttcctctataaatttattaagggagcttgtcctaaaagctatggc
tttaatgcagcaaggcttgctaatcttccagaggaggttattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcaatcactacgattatttcgggaagtttgcctggct
agtgaaaggtcgactgtagatgctgaagctgtccctaagttgctgactttgattaaggaa
ttatag
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integrated database retrieval system
