Vulpes lagopus (Arctic fox): 121490727
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Entry
121490727 CDS
T07435
Symbol
DDX20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vlg03041
]
121490727 (DDX20)
Enzymes [BR:
vlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121490727 (DDX20)
Spliceosome [BR:
vlg03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
121490727 (DDX20)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Motif
Other DBs
NCBI-GeneID:
121490727
NCBI-ProteinID:
XP_041610601
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All DBs
Position
5:70382027..70406849
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AA seq
820 aa
AA seq
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MAAAFEVPAALATVEAAVPAERVAAQLTAAEPVPGPARSLRTAHDVSGPRTRTGDVLLAE
PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIA
LDSLVLENQSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK
CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML
AVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKIVNSYPLAHKIFEEKAQHL
QELFSRIPFNQALVFSNLHSRAQHLADILSAKGFPAECISGNMNQNQRLDAMAKLKHFHC
RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEEN
VMMKIAQKCNINLLPLPDPILPGLMEECLDWDVEVKAAMHTYGLASVPTQPLKKQIQKME
RTFQTQKAHGNHVASSRNTSVSALLVKSKNSTKQKLPAKSHSECGIIEKAVSPKEWGCGI
QLEEQVKNSVQIPAESSASQHQVKEVSLPKIPCLSSFKIHLPYSLTFIELVEDYEHYINE
GLEKPVEIIRHYTGPGDPTVNPQNGLVSSKVPEEKVLMLASSSQSGDSESDSDSYSSRTS
SQSKGNKSYFEGSSDTQLKDSESTPMDGHTSLEQPLNGNDAPNPAECQESPETQTKARHK
EGANQRAKQSRRNPPPWSSYQVQAEPQEDGWYDCCGETHPGFSDAYQDYEEYWRAYYRAW
QEYYSAASQSYYWNAQRHPGWMAAYHMNTIYLQEMMRGNH
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgtttgaagtccctgcggcgttagcgactgtggaggccgcggtgccggcg
gagcgtgtggccgcccagctcacggccgcagagccggttcccgggccggcgcggagcctg
cggacggctcacgacgtcagcggcccgcggactcgcaccggggacgtgctgctggcggag
ccggccgacttcgagtcgctgctgctgtcgcggccggtgctggaggggctgcgggcggcc
ggcttcgagcggccctcgccggtgcagctcaaggccatcccgctcgggcgctgcgggctc
gatttaattgttcaagccaagtctggcactgggaaaacctgtgtgttctctaccattgct
ttggactctcttgttctcgaaaaccaaagtacccagattttgatcttggctcctacaaga
gaaattgctgtacagatacattctgttattactgctattggaataaaaatggaaggctta
gagtgtcatgtctttattggagggactccattatcacaagacaaaaccaggcttaaaaag
tgtcatattgctgttggctctcctggcagaattaaacaactgatagaacttgactacttg
aacccaggcagtatacgtctctttattcttgatgaagcagataagcttttagaagaaggc
agcttccaggagcaaataaactggatttattcttccttgcctgctagtaaacagatgttg
gcagtatcagctacctaccctgaatttttggctaatgctttgacaaagtacatgagagat
cccacttttgtaagactaaattccagtgatccgagtctcataggtttgaagcagtattac
aaaattgtcaattcataccctttggcccataagatttttgaggaaaaggctcagcattta
caggaactgttcagcagaattccatttaatcaagccttagtcttttctaatttgcacagc
agagcacaacacttggcagatatcctttctgctaaaggctttcctgctgagtgcatttca
ggcaacatgaatcagaatcagcgtcttgatgctatggccaaactgaaacattttcattgc
agagtcctcatttccaccgatttgacttcccgtggaattgatgctgagaaggtgaacctg
gtagtaaatctggatgtaccattggattgggagacatacatgcatcggattggcagagct
ggtcgttttggtactttggggttgacagtgacctactgttgtcggggagaagaagaaaac
gtgatgatgaaaattgcccagaaatgtaacatcaatcttctgcctttaccagatcccatt
cttcctggtctaatggaggaatgtttggattgggacgtggaggttaaagctgctatgcat
acatatggcttagcaagtgtacctacccagcccttaaaaaagcagattcaaaaaatggag
agaacctttcaaactcagaaagctcatggtaaccacgtggcttcatctagaaatacttct
gtgtctgcattattagtcaaatcaaaaaatagtaccaaacaaaagcttcctgcaaaaagc
cactcagagtgtggaatcatagaaaaagcagtgtctccaaaagagtggggctgtggcata
cagttggaagagcaagtgaagaattctgttcagatccctgctgagagctctgccagtcag
caccaggtcaaagaagtgtcactccccaaaattccttgtctgtcttcctttaaaatccat
ctgccatactctttgacttttatagaattggtagaggattatgaacattatattaatgag
gggctagagaaacctgtggaaatcatcaggcattacacaggtcctggggatccaactgtg
aatcctcagaatggtttggtaagcagtaaagttcctgaggagaaagtgctgatgctggca
agcagtagccagtctggagactctgagagtgacagtgattcttacagctcgaggacttcc
tcccagagcaaaggaaataagtcctactttgaaggctcttcagatactcagctgaaagac
tcagagtccacgcctatggatggccatacatctttggaacaacctctgaatggaaacgac
gcccctaatcctgcagagtgtcaagaatcacctgaaacccaaacgaaggcaaggcataaa
gagggggctaaccagagagctaagcagagccggagaaaccctcccccgtggtcttcctat
caagtgcaggctgagccccaggaagatggttggtatgactgctgtggggagacgcatcca
ggtttttctgacgcctatcaggattatgaggaatactggagggcttactacagggcgtgg
caggagtattactctgctgcctctcagtcgtattactggaatgctcagaggcatccaggc
tggatggcggcttatcacatgaatacaatttatctacaagaaatgatgcgcggcaaccat
tga
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