Vulpes lagopus (Arctic fox): 121491124
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Entry
121491124 CDS
T07435
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vlg03016
]
121491124 (RTCB)
Enzymes [BR:
vlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121491124 (RTCB)
Transfer RNA biogenesis [BR:
vlg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121491124 (RTCB)
Prokaryotic type
tRNA splicing ligases
121491124 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
121491124
NCBI-ProteinID:
XP_041611528
LinkDB
All DBs
Position
5:14899403..14923252
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AA seq
595 aa
AA seq
DB search
MTAFSLALGREGKDPSISRKVNTRGQSNLTREKRFGCYEFRASALAVAQPAAEPAAPARR
PPEGGASGRGTARQRLFEAEPGVLVSLVAAMSRSYNDELQFLEKINKNCWRIKKGFVPNM
QVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHS
GYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDH
IPVGVGSKGVIPMSAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSAR
AKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVA
TDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQ
AFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAV
DYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLD
KLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgactgcctttagcttagctttgggccgggaaggaaaggacccgtcaatatccagaaag
gtgaacactagagggcagtctaacttaacgagagaaaagcgatttggttgctacgagttt
cgagcctcggcgctcgccgtcgcccagcctgcggcagagccggccgcgcctgcgcgtcgg
cctccggagggcggtgcttccggccgcgggacagcgcggcagcggctcttcgaagcggag
ccgggagttctcgtcagcctcgtcgccgccatgagtcgcagctataatgatgagctacag
ttcttggagaagatcaataaaaactgctggagaatcaagaagggcttcgtgcccaacatg
caggtggaaggcgttttctatgtgaatgatgctctggaaaaattaatgtttgaggaatta
agaaatgcctgtcgaggtggtggtgttggtggcttcctaccagccatgaaacaaattggc
aacgtggcagccctgcctgggattgttcatagatctattgggcttcctgatgtccattca
ggttatgggtttgctattgggaatatggcagccttcgatatgaatgaccccgaagcagtg
gtatccccaggtggtgtcggatttgacatcaactgtggtgtccgcttgctaaggaccaat
ttagatgaaagcgatgtccagcctgtgaaggagcagcttgcccaagctatgtttgaccat
attcctgttggagtgggatcaaaaggtgttatccccatgagtgccaaagacttggaggag
gccttagagatgggtgtggattggtccctgagggaaggctatgcctgggctgaggacaag
gagcactgtgaggagtacggcaggatgttgcaggccgaccccaataaagtctctgcaagg
gctaagaaaagaggccttcctcagttggggaccctgggagcaggcaaccactatgcagaa
atccaggttgtggatgagattttcaatgagtatgctgctaagaaaatgggcatcgaccat
aagggacaagtgtgtgtgatgatccacagtggaagcagaggcttgggccaccaagtagcc
acagatgcactggtagctatggaaaaagccatgaaaagagacaagattatagtcaacgac
cggcagttggcttgtgctcggattgcttccccagagggtcaggactacctgaaggggatg
gcagctgctgggaactatgcctgggtcaaccgctcttccatgaccttcttaacccgtcag
gcttttgccaaggtcttcaacacaacccccgatgacttggacctgcatgtgatctatgat
gtttctcacaatattgccaaagtagaacagcacgtggtggatggaaaggaacggacactg
ttggtacacaggaagggatccactcgggctttccctcctcaccatcccctcattgctgtg
gattaccaactcactggacagccggtgctcattggtggcaccatgggcacctgcagttac
gttcttacgggcaccgagcagggcatgacggagacctttgggaccacttgccatggagcg
ggccgtgcattgtcccgagcaaaatctcgtcgtaatttagatttccaggatgtcttggac
aaactggcagatatgggaatcgcaatccgagttgcctcacccaaactggttatggaagag
gctcctgagtcctataagaatgtgacggatgtggtgaacacctgccatgatgctggaatc
agcaagaaggccattaaactgagaccgattgctgtgatcaaaggatag
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