Vulpes lagopus (Arctic fox): 121491500
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Entry
121491500 CDS
T07435
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121491500 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vlg04121
]
121491500 (TRIM54)
Ubiquitin system [BR:
vlg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121491500 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
TRIM_CC
DUF349
Sina_RING
MIF4G_like_2
CoiA_N
COG2_C
UvrD_C
DD_DDX21-DDX50
DUF1421
Zn_ribbon_FGT1_2
CYP38_PsbQ-like
Motif
Other DBs
NCBI-GeneID:
121491500
NCBI-ProteinID:
XP_041612416
LinkDB
All DBs
Position
5:complement(112438618..112460044)
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AA seq
429 aa
AA seq
DB search
MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAM
LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFEALCSVLEERKAELLQALAREQE
EKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGTMSKVELAG
RPEPGYESMEQFTVSVEHVAEMLRTIDFQPGASGEEEDEEVALDGEEGSAGPEEERPDGP
EGECGPRGLAGLARRPGPLCSEASLPRQRSLVASPPPAGGAPPSARAEVHSLSHQPFLWG
FGRPGWVGR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcacagtgggtttcaagccgctgctaggggatgcacatagcatggacaacctg
gagaagcagctcatttgccccatctgcctggagatgttctccaaaccggtggtgatcctg
ccctgccagcacaacctgtgccgaaagtgtgccaacgatgtcttccaggcctcgaaccct
ctgtggcaatcccggggctccaccaccgtgtcttcaggaggccgtttccgctgcccatct
tgcaggcatgaggttgtcctggacagacatggtgtgtatggcctgcagcgaaatctgcta
gtagagaacattatcgacatttacaagcaggagtcttcccggccactgcactccaaggcc
gagcagcacctcatgtgtgaggagcacgaagaggagaagatcaatatctactgcctgagc
tgcgaagtgcccacctgctctctctgtaaggtcttcggtgcccacaaggactgtgaggtg
gccccactgcccaccatttacaaacgtcagaagagcgagctcagtgatggcatcgcaatg
ctggtggcgggcaacgaccgtgtgcaagcagtgatcacacagatggaggaagtgtgccag
accatcgaggacaacagccggaggcagaagcagctgcttaaccagaggttcgaggccctg
tgctccgtgctggaggagcgcaaggccgagctgctgcaggcgctggcccgcgagcaggag
gagaagctgcagcgcgtccggggcctcatccgccagtatggagaccacctagaagcctcc
tctaagctcgtggagtccgccatccagtccatggaggagccacagatggcgctgtacctc
cagcaggccaaggagctgatcaataaggtcgggacaatgtcgaaagtggagctggcagga
cggccagaaccgggctatgaaagcatggagcagttcaccgtgagcgtggagcacgtggcc
gaaatgctgaggaccatcgacttccagcccggcgcttccggggaggaagaggatgaggag
gtggcattggacggggaagagggcagcgcagggccggaggaagagcggccggatgggccg
gaaggtgagtgtggcccgaggggcctggcggggctggctcgacgccccgggcccctctgc
agtgaggcctccctgccgcgccagcgatctttggtggcctccccacccccagcgggaggg
gcgccccctagcgcgcgtgcagaagtacactctctttcccaccagcctttcctctggggc
tttgggagaccaggttgggtcgggaggtag
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