Vulpes lagopus (Arctic fox): 121493191
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Entry
121493191 CDS
T07435
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121493191 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlg03019
]
121493191 (CPSF2)
Messenger RNA biogenesis [BR:
vlg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121493191 (CPSF2)
U7-dependent histone pre-mRNA processing factors
121493191 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
121493191
NCBI-ProteinID:
XP_041614837
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Position
6:complement(72308489..72342856)
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AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatcaaattaactaccctctctggggttcaagaagagtctgctctttgc
tatcttctgcaagttgatgagtttagatttctgttggactgtggctgggatgagcacttt
tctatggatattatagattccctgaggaagcatgttcaccaaattgatgcagtactgttg
tctcaccccgatcctctgcatcttggtgccctcccgtacgccgtcggaaagctgggtctg
aactgtgctatctacgcaaccattccggtttataaaatgggacagatgttcatgtatgat
ctttaccagtctcgacacaatacagaagactttacactctttacattagatgatgtggat
gcagcatttgataagatacagcagttaaaattctctcagattgtgaatttgaaaggtaaa
ggacatggcttgtctatcacacctctgccagctggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtttacgcagttgactttaaccacaagagg
gagatccatttaaatggatgttccctggaaatgctaagcagaccctccctgcttatcaca
gattcatttaatgctacatatgtgcagcctaggagaaaacagagagatgagcaacttctg
acaaatgtcctggaaacgcttcgaggtgatggaaatgtattaatagcagtggacactgca
ggcagagttttggaacttgctcaacttcttgatcagatctggagaactaaagatgcagga
ctgggtgtctactcactggcgctcctgaataatgtcagctataatgtggtggagttttct
aagtcccaggtagaatggatgagtgacaaattgatgagatgttttgaagacaaaagaaac
aatccatttcagtttcgtcatctctctttatgtcatggtctttctgacttggctcgagta
cctagccccaaagtagtactcgccagccagcctgacctggaatgtggattttcaagggat
ctcttcattcaatggtgtcaggaccctaaaaattcaatcattctaacttacagaactact
cctgggactttagcacgtttcctaattgataatccttctgaaaaaattacagaaatagag
ttgaggaaacgtgtgaagcttgaaggaaaagaactagaagaatacttagaaaaagagaaa
ctaaagaaagaggcagcaaaaaaacttgagcagtcaaaagaggcagacatagattccagt
gatgagagtgatgttgaggaagacattgaccagccatcagctcataagatgaagcatgac
ctgatgatgaaaggtgaaggtagtcggaaaggaagtttcttcaaacaggctaaaaagtct
taccctatgtttcctgccccagaagaaagaattaaatgggatgaatatggagaaattatc
aaaccagaagatttcttagttccagaactccaagcgactgaagaagagaaaagcaaatta
gaatctggcttgacaaatggagatgaacccatggatcaggacttatctgatgttccaacc
aagtgtatttctacaacagagtctattgaaataaaagccagagttacttacatagactat
gaaggacgctctgatggagattccattaaaaagatcattaatcagatgaaaccacgacag
ttaatcattgtccatggaccaccagaggccagtcaggatctcgcagagtgctgtcgtgca
tttggtgggaaagatattaaagtgtacatgccaaagctacatgaaacagttgatgccact
agtgaaactcatatctatcaggtgagattgaaagattcactcgtcagctcccttcagttt
tgtaaggcaaaagatgctgaattagcttggatagacggtgtcttggacatgagagtttcc
aaagtggacacaggagttattttagaagaaggagaactgaaggatgatggagaagactcc
gaaatgcaagtggacgctccttcggattccagcgttatagcacaacagaaggccatgaag
agtctgtttggagatgatgagaaagagacaggtgaagaaagcgagatcattccaaccttg
gaaccattgcctccccacgaggttcctggacatcagtcagtttttatgaacgaaccaaga
ctgtcagacttcaaacaagttcttttacgggaggggattcaagctgaatttgtaggaggt
gtgcttgtttgtaacaatcaagtagcggtccgtagaacagaaactggacgcattggatta
gaaggctgcctttgtcaagatttttataggataagagaccttttatatgaacagtatgct
attgtgtaa
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