Vulpes lagopus (Arctic fox): 121495414
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Entry
121495414 CDS
T07435
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vlg03041
]
121495414 (YTHDC2)
Enzymes [BR:
vlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121495414 (YTHDC2)
Spliceosome [BR:
vlg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121495414 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
121495414
NCBI-ProteinID:
XP_041618777
LinkDB
All DBs
Position
7:complement(127890301..127968084)
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AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQSTLTEWYSAQENT
FKPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVHTNGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHGCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAVQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGSKEKKVRFHPTSVLSQPQYKKIPPAN
GQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFR
VDGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLDPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKT
SADTEFSDESATAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDSSSY
PSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWVRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGDKTTAD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgccggctcctggtggcggcgggggcggc
ccagctccgtgcggcccggggggcgggggccgggctaaggggctgaaggacattcgtata
gacgaggaggtgaagatcgcggtcaatatcgctctggagcgcttccggtacggggaccag
agagaaatggaatttccttcttctttgaccagcactgaaagagcctttattcatcgattg
agtcagtctcttggtttggtctctaaaagcaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcaaagatttcctgtcaccaataaagagcgt
actgaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccga
gaaatgagcaaaaccagtgggcgactcaacaatggcatacctcagattccagtgaaaaga
ggagaatctgaatttgattctttcaggcagtctctccctgtgtttgagaaacaagaagaa
attgttaaaataattaaagaaaataaagtagttttgattgtaggagagactgggtctgga
aagactacacagattcctcagttccttttagatgattgctttaaaaatggtatcccctgc
cgtatattttgtacccagccaagacggttagcggcaattgccgtggctgaaagagttgct
gcagagagaagggaaaggattggtcaaacaattggatatcagatccgattagaaagcagg
gtttctccaaagacacttctgacattttgcactaacggggttttacttcgtacattgatg
gcaggagatagtacattgtctactgtgacacatgttattgtggatgaagtacatgaaagg
gatcgatttagtgactttttacttacaaagttaagagatctgttgcaaaagcatccaact
ttgaaacttattctttctagtgctgccttggatgtgaatctttttataagatattttgga
agttgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttctagaa
gacatcttaagaactactgggtacacaaacaaagaaatgttaaaatacaaaaaggaaaaa
caacgagaagagaaacaacaaagcacccttacggaatggtattcagctcaagagaatact
ttcaagcctgaatctcagaggcagagaactgttccaaatgtgactgaagagtatgattta
ttggatgatggcggtgatgctgtcttcagtcagttgacagaaaaagatgtgaattgtctt
gagccatggttaataaaggaaatggatgcttgtctctctgacatatggctgcataaagat
gttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgttgattac
aggcatagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggtttttcaagt
caagtagagcagttaattagtatgggagccaacgttcatagtaaagcatcaaatggctgg
atggctttagattgggctaaacactttggacagactgaaattgtggatcttctagaatct
tacagtgcttcactggaatttggaaatctagatgaaagttctctggttcacacaaacgga
agtgacctcagtgcagaagacagagagctcctgaaagcatatcatcatagttttgatgat
gaaaaagtagacttggatttgatcatgcaccttctatacaatatctgccatggttgcgat
gctggtgcaatattaattttcctacctggatatgatgaaattgttggattgagggatcgc
atcctgtttgatgataaacgatttgctgacaacacacatagatatcaagtctttatgctt
cattcaaatatgcaaacatctgatcaaaagaaagtattaaaaaacccacctgccggtgtt
cgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgatgttgtc
tttgttattgattctggtaaagtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtgtggatttccaaagctagtgctgtacaacgaaaaggcagggcaggg
agatgcagacctggaatttgtttccggctgttcagtagactccgattccagaatatgttg
gaatttcagactccagaacttttgagaatgccattgcaggaactttgtttacatactaag
ctgttagccccagtgaattgtcctattgctgacttcctaatgaaagctcctgaaccccca
ccagctttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgca
tgggaagatctcactgagctggggtatcatttggctgacttgcccgtagaaccacatctt
ggtaaaatggtcctgtgcgctgttgttttaaagtgtctggaccccatcctcacaattgcc
tgcacgttagcctatcgagatccttttgtcctgccaacccaggcctctcaaaaacgggca
gctatgctgtgtaggaagcgcttcactgcaggaactttcagtgaccacatggcacttctc
agagcattccaggcatggcagaaagcacgaagtgatgggtgggagcgagccttttgtgaa
aagaattttctttcacaagccaccatggaaataatcattggcatgagaactcagttgctt
ggtcaacttagagcatcaggttttgttagagctcgaggtggtggtgacattcgagatgtt
aacacaaattctgagaactgggctgttgttaaagctgcgttggtggcaggcatgtatcct
aatttagtccatgtggacagagaaaatgtagtgttgacagggtcaaaggagaaaaaagtt
cggtttcatcccacttcggttctcagtcagcctcagtataaaaagattcctccagccaat
ggtcaggctgcagcaattcaggcactgcctacagattggcttatttatgatgaaatgacc
agagcccatagaatagctaatattagatgttgttcagcagtgacacctgttactgtattg
gtattctgtggaccagctaggttggcaagtaatgctcttcaagaaccttcatcatttcga
gtggatggtattcctaatgacagtagtgatagtgaaatggaagatagaactactgctaat
ttggcagctttgaaacttgatgagtggctcaatttcaaactagaccctgaggcagccagt
ttattgctgcaactcagacagaagtggcacagcttatttttacgccgaatgagagctccg
tctaaaccttggtctcaagttgatgaagctaccataagagccattatagctgttctgagc
actgaagaacagtctgcaggtttacaacagccatctggaataggtcagaggccaaggcct
atgtcttcagaagaacttcccctggcatcttcttggaggtcaaataacagtaggaaaact
tcagcagatactgaattttctgatgagtctgctactgcagaaagagtgttgatgaaatct
ccatctccagcactgcacccacctcagaagtacaaagatagagggattttacatcctaaa
cgaagcactgatgaccgatcagatcaatcttctgtgaaatctacagacagcagtagctac
ccaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatttgagaaacctt
gaaatttctcaacagaagggtatctggtctacaacccctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggacat
ttccagggattctctaggatgtcttctgagataggaagggagaagagccaggactggggc
tcagctggactgggaggagtatttaaagtggagtgggtccggaaggagagtcttcccttt
cagtttgcacatcacttgctcaatccttggaacgataacaagaaagtccagatcagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
ccattgggagacaaaaccacagctgattga
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integrated database retrieval system
