Vulpes lagopus (Arctic fox): 121496263
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Entry
121496263 CDS
T07435
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121496263 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlg03019
]
121496263 (XAB2)
03041 Spliceosome [BR:
vlg03041
]
121496263 (XAB2)
Messenger RNA biogenesis [BR:
vlg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121496263 (XAB2)
Spliceosome [BR:
vlg03041
]
Complex B
Other components
Prp19-related factors
121496263 (XAB2)
Complex C
121496263 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_1
Motif
Other DBs
NCBI-GeneID:
121496263
NCBI-ProteinID:
XP_041620607
LinkDB
All DBs
Position
7:5759400..5773063
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggcccgagcggccggacctagttttcgaagaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggcttcgc
tacattgagttcaagcaaggtgccccgaagcccaggctcaatcagctgtatgagcgggca
ctaaagctgctgccctgcagctacaaactctggtaccggtacctaaaggcacgtcgggca
caggtgaagcatcgctgtgtgactgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcataagatgccacgtctgtggctagactattgccaattcctg
atggaccagggccgcgtcacacacacccgccgtacgtttgaccgtgccctccgggcgctg
cccattacacagcactctcgcatctggcccctgtacctgcgcttcctccgctcacatcca
ctgcctgagacggctgtgcggggctatcggcgctttctcaaactcagccctgagagtgca
gaggagtacatcgagtacctcaaatccagtgaccggctggacgaagctgcgcagcgcctg
gccaccgtggtgaatgatgagcgttttgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccagacaaggtgcagtcactcaacgtg
gatgccatcatccgcggaggcctcactcgcttcactgaccagctaggcaagctctggtgc
tcgctggctgactactacatccgcagtggccacttcgagaaggctcgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagccaagatggagacagcctcagaactggggcgtgag
gaggaagatgatgtggacctggagctgcgcctggcccgcttcgagcagctcattggccgg
cggcccctgctcctcaacagcgtcttgctgcgccagaacccgcaccacgtacacgagtgg
cacaagcgtgtggccctgcaccaggggcgcccccgggagatcatcaacacatacacagag
gctgtgcagacggtggaccctttcaaggctacaggcaagccccacacactgtgggtcgca
tttgccaagttttatgaagacaatgggcagctggacgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaaacaggtggatgacctggccagcgtgtggtgtgagtgtggc
gagctggagctccggcacgaaaactacgatcaggccttgcggttgctgcggaaggccact
gcactgcccgcccgacgagccgagtacttcgatggctcggagcctgtgcaaaaccgtgtg
tacaagtcactgaaggtgtggtcgatgctcgccgacctggaggagagcctaggcaccttc
cagtccaccaaggctgtatacgaccgcatcctggacctacgcatcgccacaccccagatc
gtcatcaactatgccatgttcctggaggagcataagtacttcgaggagagcttcaaggcg
tatgagcgtggcatctcattgttcaagtggcccaacgtgtctgacatctggagcacctac
ctgaccaaattcatcgcccgctatgggggccgcaagctggagcgagcacgggacctcttt
gaacaggcgctggacggctgccctcccaaatacgcaaagacattgtacctgctgtacgca
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtatgagcgtgccacc
agggccgtggagcccgcgcagcagtatgacatgttcaacatctacatcaagcgtgcagct
gagatctatggagttacccacacccgcggcatctaccagaaggccatcgaggtgctgtca
gacgagcatgcccgggagatgtgcttgcggttcgcagacatggagtgcaggcttggcgag
attgaccgtgcgcgtgccatctacagcttctgctcccagatctgcgaccccaggaccact
ggcgctttctggcaaacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacactcaggtcaatttc
atggcctcccagatgctgaaggtgtcaggcagcgccacgggcaccgtgtcggacctggcc
cccgggcagagtggcatggatgacatgaagcttctggaacaacgggcagagcagctggca
gctgaagctgagcgggatcagccctcacgggcccagagcaagatcctgtttgtgaggagc
gatgcctcccgggaggagctggctgagctggcgcagcaagccaaccccgaggagattgag
ctgggcgaggatgaggatgaggatgagatggacctggagcccaacgaggtgcggctggag
cagcagagtgtgccggccgccgtgttcgggagcctgaaagaggactga
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