Vulpes lagopus (Arctic fox): 121497034
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Entry
121497034 CDS
T07435
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121497034 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vlg01009
]
121497034 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
vlg04515
]
121497034 (PCDH1)
Protein phosphatases and associated proteins [BR:
vlg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121497034 (PCDH1)
Cell adhesion molecules [BR:
vlg04515
]
Cadherins
Protocadherins
121497034 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
121497034
NCBI-ProteinID:
XP_041621979
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All DBs
Position
8:complement(86198779..86225240)
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AA seq
1232 aa
AA seq
DB search
MDSGAGGPRCPEAALLILGTARMGPLKPSPGPSGQRLLLALLLLLAASPGHATRVVYKVP
EEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQN
QLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPENTNIGS
LFPIPVASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEGKQPQLIVMGNLDRERWDS
YDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQVKAN
DSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGTN
PKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEG
ENAAVTCVVANDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPP
LSSTNSLKVQVVDVNDNAPVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNAELVYSL
EPEPAAKGLFTISPDTGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDC
NDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVIQNGTG
TILSSLSFDREHQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHQL
LTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHH
GLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYE
RSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSSKA
SKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDL
GRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTN
PPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALP
EDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTQECSEFGHSDTCWMPGQSSPSRRT
KSSALKLSTFVPYQDRGGQEPVGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDS
ATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggacagcggggccggcggcccgcgctgccccgaggcggccctcctgattctaggtact
gccaggatggggcccctgaagcccagcccaggccccagcgggcaacggttgctgctggca
ctgctgcttctgctggctgcatccccaggtcatgccactcgggtggtgtacaaagtaccg
gaggaacagccacccaacaccctcattgggagcctcgcagctgactatggctttccagat
gtgggccacttgtacaaactagaggtaggcgccccatacctgcgagtggatggcaagacg
ggagacatcttcaccactgagacctctatcgaccgcgaggggctgcgtgaatgccagaac
cagctccccggtgagccttgcatcctggagtttgaggtgtctattacggacctcgtgcag
aatggcagtccccggctgttagagggccagatagaggtacaggacatcaatgacaacaca
cccaactttgcctcaccagtcatcacgctacccatcccggagaacaccaacattggctca
ctcttccccatcccggtggcctctgaccgtgatgctggccccaacggtgtggcatcatat
gagctgcaggccgggcccgaggcccaggagctatttgggcttcaggtggcagaggaccag
gaggggaagcagccacagctcatcgtgatgggcaacctggaccgggagcgctgggattcc
tatgacctcaccatcaaggtgcaggatggtggcagccccccacgtgccagcagtgccctg
ctgcgagtcactgtgcttgacaccaatgacaacgcccccaagtttgaacggccctcctac
gaggctgaactgtctgagaacagccccataggccactcggtcatccaggtgaaggccaat
gactcggaccaaggtgccaacgcggagattgactacacgttccaccaggcgcccgaggtg
gtgaggcgtctcctgcgactggacagaaacactggacttatcactgtgcagggccccgtg
gatcgtgaggacctaagtaccctgcgcttctcggtgctcgccaaggaccgaggcaccaac
cccaagagtgcccgtgcccaagtggtagtgactgtgaaggacatgaatgacaatgccccc
accattgagatccggggcatagggctggtgacccatcaagacgggatggccaatatctca
gaggatgtggcagaggaaacagcagtggccttggtgcaggtatctgaccgagatgaggga
gagaatgcagctgtcacctgtgtggtggcaaatgatgtacccttccagctacgccaggcc
agtgagacaggaagtgacagcaaaaagaaatacttccttcagaccaccactccgctcgac
tacgagaaggtcaaagactataccatagagattgttgctgtggactctggcaacccccca
ctctcgagcaccaactccctcaaggtccaggtggtggacgtcaatgacaatgcccctgtc
ttcacacagagcatcacagaggtcgccttcccagaaaacaacaagccgggtgaagtggtc
gctgaagtcactgccagtgatgccgactcaggctctaatgccgagctggtttactctctg
gagcctgagccggctgccaagggcctcttcaccatctcacctgacactggagagatccgg
gtgaagacatcccttgaccgggaacagcgggacagttatgagttaaaagtggtggcagct
gaccggggcagtcccagcctgcagggcacagccaccgtccttgtcaatgttctggattgc
aatgacaatgaccccaagtttatgctgagtggctacaacttctcagtgatggagaacatg
ccagcgctgagtccagtgggcatggtgactgtcattgatggggacaaaggggagaatgcc
cgggtacagctgacggtggagcaggacaatggtgactttgttatccaaaacggtacgggc
accatcctctccagcctgagctttgatcgagagcatcaaagcacctataccttccagctg
aaggcagtggatggtggtgtcccacctcgctcagcttacgttggtgtcaccatcaatgtg
ctggatgagaatgacaatgcgccctttatcactgccccttccaacacctctcaccagctg
ttgaccccccagacccgtcttggtgagacggtcagccaggtgacagctgaagacattgac
tctggtgtcaatgcagagttgacctacagcattgctggtggcaacccttacggactcttc
cagattgggtcacactcaggtgccatcacccttgagaaggagattgagcggcgccaccat
gggctacaccgcctcgtggtaaaggtcagtgaccgtggcaagcccccgcgctatggcaca
gccttggtccacctttatgtcaatgagaccctggccaaccgcacgcttctggagaccctg
ctgggccacagcctggacacgccactggacatcgacattgctggggatccagaatatgag
cgctccaagcaacgtggcaacatcctcttcggtgtggtggctggtgtcgtagctgtggcc
ttgctcattgccctggcagtgcttgtacgctactgccggcagcgggaggccaagagtggc
taccaggctggtaagaaggagaccaaggacctgtatgcccccaagcccagcagtaaagcc
tccaagggcaacaaaagcaagggcaagaagagcaagtccccgaagcccgtgaagccagtg
gaagatgaggacgaggccgggctgcagaaatccctcaagttcaatctgatgagcgatgcc
cccggagatagcccccgcatccacctgcccctcaactacccaccgggcagccctgatctg
ggccgccactaccgctctaactccccactgccttccatccagctgcagccccagtcaccc
tcggcctccaagaagcaccaggtggtccaggacctgccacccgcaaacacatttgtgggc
actggtgacaccacgtccacaggctctgagcagtactccgactacagctaccgcaccaac
ccccccaaataccccagcaagcagttacctcaccgccgcgtcaccttctccgccaccagt
caggcccaagagctgcaggacccatcccagcacagttactatgacagtggcctggaggag
tctgagacgccatccagcaagtcatcctcgggaccccgactcggtcccctggctctgcct
gaggatcactatgaacgcaccacccctgatggcagcataggagagatggagcaccccgag
aacgacctgcgccctttgcctgacgttgccatgacaggcacatgtacccaggagtgcagc
gagtttggccactccgacacgtgctggatgcctggccagtcatctcccagccgccggacc
aagagcagcgccctcaaactctccaccttcgtgccttaccaggaccgaggagggcaggag
cctgtgggcgccggcagccccagccccccggaagaccggaacaccaaaacggcccccgtg
cgcctcctgccctcctacagtgccttctcccacagtagccatgattcctgcaaggactcg
gccaccttggaggaaatccccctgacccagacctcggacttcccacctgcagccacaccg
gcatctgcccagacagccaagcgcgagatctacctgtga
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