Vulpes lagopus (Arctic fox): 121498673
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Entry
121498673 CDS
T07435
Symbol
CPSF1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121498673 (CPSF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vlg03021
]
121498673 (CPSF1)
03019 Messenger RNA biogenesis [BR:
vlg03019
]
121498673 (CPSF1)
Transcription machinery [BR:
vlg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121498673 (CPSF1)
Messenger RNA biogenesis [BR:
vlg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121498673 (CPSF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
UspB
Motif
Other DBs
NCBI-GeneID:
121498673
NCBI-ProteinID:
XP_041624643
LinkDB
All DBs
Position
9:440346..453287
Genome browser
AA seq
1453 aa
AA seq
DB search
MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEVRAARPGLEAPV
KNDRSTEGKAHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEY
DPGTHDLKTLSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRES
LAEEHEGLMGEGQRSSFLPSYIIDVRGLDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWP
GRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLY
LNQSVPPYGVALNGLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLT
LITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAA
REAADKEEPPSKKKRVDSAAGWSGGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSI
LNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFEL
PGCYDMWTVIAPVRKEQEETPKGEGSEQESSALEAEDDGRRHGFLILSREDSTMILQTGQ
EIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGSPIVQCA
VADPYVVIMSAEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCVYRDVSGMFTT
ESRLGGARDELGGRSCSEAEGQGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPA
DRDPTPFRAEPTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQA
EARKEEATRQGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKV
RFKKVPHNINFREKKPKPSKKKAEGGGAEEGVGARGRVARFRYFEDIYGYSGVFICGPSP
HWLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAP
WPVRKIPLRCTAHYVAYHVESKVYAVATSTNMPCTRIPRMTGEEKEFETIERDDRYIHPQ
QEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQG
EEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKI
FLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDA
KPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNT
FWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTML
PHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDIIL
DDLLETDRVTAHF
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccgtgtacaagcaggcgcacccgcccaccggcctcgagttctccatgtactgc
aacttcttcaacaacagcgagcgcaacctcgtggtggccggcacctcgcagctctacgtg
taccgcctgaaccgcgacgccgaggtgcgtgcggcccgcccggggctagaggcacccgtc
aagaatgacaggagcacagagggaaaggcccaccgagaacaccgggaaaagctggagctg
gtggcttccttctccttcttcggcaacgtcatgtccatggccagcgtgcagctggcgggt
gccaagcgggacgccttgctcctgagctttaaggacgccaagctgtcagtggtggagtat
gacccaggcacccatgatctgaagaccctgtctctgcactactttgaggagcctgagctg
cgggatgggttcgtgcagaatgtgcatacgccgagggtgcgcgtggaccctgacgggcgc
tgcgcggctatgctcatctacggcacgcgcctggtggtcttgcccttccgcagggagagc
ctggccgaggagcacgaggggctcatgggagaggggcagaggtccagcttcctgcccagc
tacatcattgacgtgcggggcttagacgagaagctgctcaacatcgtggacctgcagttc
ctgcacggctactacgagcccaccctgctcatcctgttcgagcccaaccagacctggcct
gggcgggtggccgtgcggcaggacacgtgctccatcgtggccatctccctgaacatcacg
cagaaggtccacccagtcatctggtccctcaccagcctgccctttgactgcacacaggcc
ctcgctgtgcccaagcccataggtggggtggtggtcttcgccgtcaactcgctgctgtac
ctgaaccagagcgtccccccgtacggcgtggctctcaacggcctcaccacaggcaccact
gcctttccccttcgcacccaggagggcgtgcggatcaccctggactgcgcacaggcggcc
ttcatctcgtacgacaagatggtcatctccctcaagggtggggagatctacgtgctgacg
ctcatcaccgacggcatgcgcagcgtccgcgccttccacttcgacaaggccgccgccagc
gtccttaccaccagcatggtcaccatggagcccgggtacctgttcctcggctctcgcctg
ggcaactcgctgctcctcaagtacacggagaagctgcaggagccccccgccagtgccgcc
cgggaggctgctgacaaggaagagccgccctcgaagaagaagcgggtggactccgcagcg
ggctggtcagggggcaagtcggtgccacaggacgaggtggacgagattgaagtgtacggc
agcgaggcccagtcgggcacccagctggccacatactcttttgaggtgtgcgacagcatc
ctcaacatcggaccctgtgccaatgccgccatgggcgagcccgccttcctctccgaagag
tttcagaacagcccggagccagacctggagatcgtggtgtgctccggctacgggaagaac
ggggccctgtcggtgctgcagaagagcatccggccgcaggtggtgaccacctttgagctc
cctggctgctacgacatgtggaccgtcatcgcccctgtgcgtaaggagcaagaggagacc
cccaagggcgaggggtcagagcaggagtccagcgccctggaggccgaggatgacggacgg
agacacgggttccttatcctgagccgggaagactccaccatgatcctgcagacgggccag
gagatcatggagttggacaccagtggctttgctacgcagggccccacagtgtttgccggc
aacattggggacaaccgctacatcgtgcaggtgtcgccactcggcatccgcttgttggaa
ggagtgaaccagctgcacttcatccccgtggacctgggctcccccatcgtgcagtgcgcc
gtggctgacccttacgtggtcatcatgagtgccgagggccatgtcaccatgttcctgctc
aaaagcgactcgtatgggggccgtcaccaccgcctggcgctgcacaagcccccactgcac
catcagtccaaggtgatcacgctgtgcgtgtaccgagacgtcagcggcatgttcacaacg
gagagccgcctgggcggggcccgcgatgagctgggaggccgcagctgctcggaggccgag
ggccagggctcggaaaccagccccacagtggatgatgaggaggagatgctgtacggggac
tcgggctccctcttcagccccagcaaggaggaggctcgccggagcagccagccccctgcc
gaccgggaccccacgccgttccgggccgagcccacccactggtgcctgctggtgcgggag
aacggaaccatggagatctaccagctccccgactggcggctggtgttcctggtgaagaac
ttccccgtggggcagcgcgtcctggtggacagctccttcggtcagcccaccacgcaggcc
gaggcccgaaaggaggaggccacgcgccagggggagctgcccctggtcaaggaggtgctg
ctggtggcgctggggagccgccagagcaggccgtacctcctggtgcacgtggaccaggag
ctgctcatctacgaggccttcccccacgactcccagcttggccagggaaacctcaaagtc
cgattcaagaaggtccctcacaacatcaacttccgggagaagaagccgaaaccgtccaag
aagaaagcggagggcggtggtgccgaggagggggtgggggcccgtggccgcgtggcccgg
ttccggtacttcgaggacatttacggctactcgggggtgttcatctgcggcccctcacct
cactggctcctggtgaccggccggggtgccctgcggctgcaccccatgggcatcgacggt
cccatcgactcctttgccccgttccacaatgtcaactgcccccggggcttcctctacttc
aacagacagggagagctgcggatcagcgtcctgcctgcctacctgtcctacgacgccccg
tggccggtcaggaagatccccctgcgttgcacggcgcactacgtcgcttaccacgtggag
tccaaggtgtacgccgtggccaccagcaccaacatgccgtgcacccgcatcccgcgcatg
accggagaggagaaggagttcgagaccatcgagagagatgaccggtacatccacccgcag
caggaggccttctccatccagctcatctccccggtgagctgggaggccatccccaacgcc
agaatcgagctggaggagtgggagcacgtgacatgcatgaagaccgtgtcgctgcgcagc
gaggagactgtgtcaggcctcaagggctacgtggctgccgggacctgcctcatgcagggg
gaggaagtcacgtgccgagggcggatcctgatcatggacgtgattgaggtggtgcccgaa
cctggccagcccctgaccaagaacaagttcaaggtcctgtacgagaaggagcagaagggg
ccggtgacggctctgtgccactgcaacggccacctggtgtccgccatcggccagaagatc
ttcctgtggagcctgcgggccagcgagctgacgggcatggccttcatcgacacccagctc
tacatccaccagatgatcagcgtcaagaacttcatcctggcggcggacgtcatgaagagc
atctcactgctgcgctaccaggaggagagcaagacgctgagcctggtgtcgcgggacgcc
aagcccctggaggtgtacagcgtggacttcatggtggacaacgcccagctgggcttcctc
gtgtctgaccgtgaccgcaacctcatggtgtacatgtacctgccagaagccaaagagagc
ttcgggggcatgcgcctgctccggcgggcggacttccacgtgggtgcccacgtgaacacg
ttctggaggaccccatgccggggggcagcggagggacccagcaagaagtcggtcgtgtgg
gagaacaagcacatcacatggttcgccacactggatgggggcatcgggctcctgctgccc
atgcaggagaagacataccggcggctactgatgctgcagaacgcgctgaccactatgctg
ccccaccacgctggcctcaaccccagggccttccggatgctgcacgtggaccggcgtatc
ctgcagaacgccgtgcggaacgtcctggacggggagttgctaaaccgctacctgtacctg
agcaccatggagcgcggcgagctggccaagaagatcggcacgaccccggacattatcctg
gatgaccttctggagacggaccgtgtcactgcgcacttctag
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