Vulpes lagopus (Arctic fox): 121500772
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Entry
121500772 CDS
T07435
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121500772 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlg03019
]
121500772 (SKIV2L)
Enzymes [BR:
vlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121500772 (SKIV2L)
Messenger RNA biogenesis [BR:
vlg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121500772 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
121500772 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
121500772
NCBI-ProteinID:
XP_041628755
LinkDB
All DBs
Position
1:complement(71669792..71681921)
Genome browser
AA seq
1246 aa
AA seq
DB search
MLETEQLVLPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSVRKWQRKMDPWSLLATLGAPVPSDLQAQRHPNTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
QDLLTVPPGFKKGVDFAPKDHPTPAPGLLSLSHLLEPLDLGGGDEDETEAVGQPGIPRGD
TVSATPCSASLARASSLEDLVLKETSTAISPPEPPKPVPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDMTGQLVDLSEYYGWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSASRVFTTLVLCDKPVSEDPQERAPAAPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVATITTKVLRVNGEKILEDFSKRQQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPRF
SAQYMKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgttggagaccgaacaactcgtgctccctcctccagatcccctggatctaccccttcgg
cccgtggagctgggatgcacagggcgctgggagctcctgaatgtgcctggggctccggag
agcacccttccccatggcctcccaccctgtgcgccagatctgcagcaggaagcagagcag
ttgtttttgtcatctccagcctggttgcctctacatggtgtggagcactccgtccgaaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtgccctct
gaccttcaggcccaaagacacccaaacacaggccagatactgggctacaaagaggtcctg
ctggagaatacaaacctatcagctacaacctccttgtctcttcgccggcccccagggccc
atctcccagtccctttgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataacagatctgagtactcgggaggaggctgaggaggagatagactttgag
caagaccttcttacggttccacctggcttcaagaaaggtgtggactttgcaccaaaggat
cacccaactccagctcctggcttgctcagcctcagtcatttgctggaacctctggatttg
ggtgggggtgatgaggatgagactgaggcagtgggacagccaggaattcccagaggggac
actgtttcagccaccccctgcagtgcttccctggcccgagcaagcagcttggaggaccta
gtgttgaaggaaacatccacagctatatctcctccagagccccccaaacctgtgcctcag
gagcagtgggcgattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagccagccttccagtggtcgtttgagccggatgtgttccagaaacaagccattctg
cacttggagcggcacgactccgtctttgtcgcagctcacacatctgcggggaagacagtt
gtggccgaatatgccattgcccttgcgcagaaacacatgacgcggaccatctacacatca
cccatcaaggccctgagcaaccagaagttccgagactttcgaaacacatttggggatgtg
ggattgctcactggggatgtacagctgcacccagaggcctcctgtctcattatgacaaca
gagatccttcgttccatgctgtacagtggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactacatcaatgatgctgagcgtggggttgtgtgggaggaggtg
ctcatcatgctccctgaccatgtctccatcatcctactgagtgctaccgtccccaacgcc
ctcgagttcgctgactggatcgggcggctgaaacgtcgccagatctatgtgatcagcact
gttgcccgccccgttcccttggagcattatcttttcacggggaacagccccaagacccag
ggggagctctttctgttgctggactctcgaggggccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggcaaaacag
cccacacatcaggggggacctgcgcaggaccgaggagtgtacctatcccttctggcctcc
cttcgcacccgcgcacagctgcccgtagtggtgttcaccttctcccggggtcgctgtgat
gagcaagcgtcgggcctcacctctcttgatctcaccacgagctcagagaagagtgagatt
cacctcttcctgcaacgctgccttgctcgcctccggggctctgaccgccagctgccccag
gtcctacacatgtctgagcttttgcaccgtggcctgggtgtgcaccacagcggcatcctg
cctattcttaaagagatcgtggagatgctcttcagtcgaggcctggtcaaggtcttattt
gccacagagacctttgccatgggtgtaaatatgcctgcccgaacggtggtgtttgactcc
atgcggaagcacgacggttctaccttccgggatctgctccctggagagtatgtgcagatg
gcaggccgtgcaggccggaggggcctggatcccacaggcactgtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgcatgatgatggggaagccatcacagttg
cagtcccagttccgactcacgtacaccatgatcctgaacctgctgcgggtggacgccctc
agggtggaagacatgatgaagagaagcttttctgagtttccatcccgcaaggacagcaag
gcccatgaacaggctctagctgaactgaccaagagactaggggccttggaggaacctgac
atgactggccaactggttgacctgtctgagtattatggctggggggaggaactgacagag
acccgaagcttgatccagcgacgcatcatggagtctgtgaatgggctcaagtctctctca
gcgggaagggtggtggttgtgaagaatcaggagtatcacaacacattgggtgtgatcctg
caggtctcctcgaattctgccagcagggtatttacaaccctggtcttgtgtgataaacct
gtgtctgaggacccacaggagagggcgccagccgcccctgatgtgccatacccggatgac
cttgtgggattcaagctgttcctgcctgaagggccctgtgaccacacagtggccaagctc
cagcccggagatgtagccactatcaccaccaaggtgctccgagtgaatggggagaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaagaaggatcctcccattgcagcc
gtgaccactgctgtccaggaactgctgcgtctggctcaggcctacccagcaggacccccg
acccttgaccctgtcaatgacctgcagctcaaggatgtatctgtggtagagggggggctc
cgggcccggaagctggaggagctgatctggggggctcagtgtgtgcacagcccccgtttc
tctgcccagtacatgaagctgcgagagcgaatgcagatacagaaggagatggagcgcctg
cgcttcctgctgtcagatcaatcactgctgctgctcccagagtatcatcagcgagtagag
gtgctccgaaccctgggttacgtagatgaggcgggcaccgtgaagctggcagggcgggtg
gcctgcgccatgagcagccatgagctgctcctcactgagctcatgtttgacaatgctctg
agtgccctgcggccagaggagattgcagccctactctctggcctggtctgccagagccct
ggggaccctggggagcagctcccaagtaccctcaaacagggagtggaacgtgtccgggct
gtggccaagcggatcggtgaggtccaggtggcctgtggcctgaaccagacagtggaggaa
tttgtcggggagctgaattttgggctggttgaggttgtgtacgagtgggcccgtggcatg
cccttttccgagttggcggggctgtcagggacccctgagggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcgctgaggggggcagcccgcctggtaggtgagcct
gtgctaggtgccaagatggagacggcagctaccctgctacggagggacatcgtctttgct
gccagcctgtacactcagtga
DBGET
integrated database retrieval system
