Vulpes lagopus (Arctic fox): 121501768
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Entry
121501768 CDS
T07435
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
121501768 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
vlg04040
]
121501768 (SCN1A)
Ion channels [BR:
vlg04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121501768 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
FUT8_N_cat
PFF1_TM
FraC
Motif
Other DBs
NCBI-GeneID:
121501768
NCBI-ProteinID:
XP_041630116
LinkDB
All DBs
Position
11:complement(90472844..90613659)
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AA seq
2009 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIERNITVNY
NGTLVNETLIEFDWKSYIQDSRYHYFLEGILDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAVTASEHSREPSAAGGLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTEHFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKISTSCELPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGVAYVKRKIYEFIQQSFVRKQKILDEIKPLDDLNNKKDSCMSNHTTEIGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPIVEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTT
TGDMFDITEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSEYVTNILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKIKGGANLLVKEDMIIDRINENSITEKTELTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcggctattgaaagacgcattgcagaagaaaaggctaagaatcccaaaccagac
aagaaagatgatgacgaaaatggcccaaagccaaatagtgacttggaagctggaaagaac
cttccttttatttatggagacatccctccagagatggtgtcagagccgctggaggacctg
gacccgtactatatcaataaaaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctctgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttgaca
aactgtgtgtttatgacaatgagtaaccctcctgactggacaaagaatgtagagtacacc
ttcacaggaatatatacttttgaatcacttataaaaattattgcaaggggcttctgttta
gaagactttactttccttcgagacccatggaactggctcgacttcactgtcattacattc
gcatacgtgacagagtttgtggatctgggcaatgtctcagcgctaagaacattcagagtt
ctccgagcactgaaaacaatttcggtcatcccaggcctgaagaccattgtgggggccctg
atccagtcagtgaagaagctctctgatgtcatgattctgactgtgttctgtctgagtgtg
tttgcactgatcgggctgcagctgttcatgggcaacctgcggaataaatgtgtacaatgg
cctcccaccaatgcttctctagaggaacatagtatagagaggaatataactgtgaattat
aatggcacgcttgtcaacgaaactctcattgagtttgactggaaatcatatattcaagat
tcaagatatcattattttctggagggtattttggatgcactcctatgtggaaatagctct
gatgcaggtcaatgtccagaaggatatatgtgtgtgaaagctggtagaaatcctaattat
ggctacacaagctttgataccttcagttgggcttttttgtctctgtttcgactgatgact
caggacttctgggaaaatctttatcagctgacattacgtgctgctggaaaaacatacatg
atattttttgtgctggtcattttcttgggctcattctatctgataaatttgatcctggct
gtggtggccatggcctatgaggaacagaatcaggccaccttggaagaagcagaacagaaa
gaggctgaatttcagcagatgctcgaacagcttaaaaagcaacaggaggcagctcagcag
gcagcagctgtaactgcctcagagcattccagagaacctagtgccgccggggggctctcg
gatagctcatctgaagcatccaagttgagttccaagagtgctaaggaaagaagaaaccgg
agaaagaaaagaaaacagaaagagcagtcaggtggggaagagaaagatgaggatgaattc
cataaatctgaatctgaagacagcatcaggaggaaagggtttcgcttctccatagaaggg
aacagattgacctatgaaaagaggtactcctccccgcaccagtctttgttgagcatccgt
ggctccctattttctccaaggcgaaatagcagaacaagccttttcagctttagagggcga
gcaaaggatgtgggatcagagaatgactttgcggatgatgagcacagtacgtttgaggat
aacgagagccggagagactccttgtttgtgccacgacgacacggagagcgacgcaacagt
aacctgagtcagaccagtaggtcttcccggatgctggcagtgtttccagcgaatgggaag
atgcacagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagttcct
acatcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaaccaccgaaactgagatgaggaagagaaggtcaagttctttccatgtttcc
atggactttctagaagatccttcccaaaggcaaagagcaatgagcatagccagcatttta
acaaatacagtagaagaacttgaagaatccagacagaaatgcccaccctgttggtataaa
ttctccaacatattcttaatctgggactgttcaccatactggttaaaagtgaaacatatt
gtcaacttggttgtaatggacccatttgttgacctggccatcaccatctgtattgtctta
aatacccttttcatggccatggagcactatccaatgacggaacatttcaataatgtgctt
acagtaggaaacttggttttcactggaatctttacagcagaaatgttcctgaaaattatt
gccatggatccttactattatttccaagaaggctggaatatctttgatggttttattgtg
acacttagcctggttgaacttggcctcgccaatgtggaaggattatcagttctccgttca
ttccgactgctccgagttttcaagttggcaaaatcttggccaacattgaatatgctgata
aagatcattggcaactcagtgggggctctgggtaacctcaccttggtgttggccatcatt
gtcttcatttttgctgtggtcggcatgcagctctttggtaagagctacaaagattgtgtc
tgcaagatctctaccagctgtgagctcccacgctggcacatgaatgacttcttccactcc
ttcctaattgtcttccgtgtgctgtgtggagagtggatagaaaccatgtgggactgcatg
gaggtcgctggtcaagccatgtgccttactgtcttcatgatggtcatggtgattggaaac
ttggtggtcctgaacctctttctggccttgctactgagctcatttagtgcagacaatctt
gcagccacagatgatgataatgaaatgaacaatctccaaatagctgtggacaggatgcac
aagggagtagcttacgtgaagagaaaaatatatgaattcattcaacaatcctttgttagg
aaacaaaagattttagatgaaattaaaccacttgatgatctaaacaataagaaagacagt
tgtatgtccaatcatacaacagaaattggaaaagaccttgactatcttaaagacgtgaat
ggaaccacaagtggaataggaaccggcagcagtgttgaaaaatacattattgatgaaagc
gattacatgtcattcataaacaatcccagtcttactgtgactgtaccaatcgctgtagga
gagtctgactttgaaaatttaaacacagaggacttcagtagtgaatcggacctggaagaa
agcaaagagaaactcaatgaaagcagtagctcctctgaaggcagcactgtagacattggt
gcacctgcagaagaacagcctatagtggaaccagaggaaacccttgaacctgaggcctgt
ttcactgaaggctgtgtacaaagatttaaatgttgtcaaatcagtgtggaagaagggaga
ggaaaacaatggtggaacctgagaagaacatgtttccgaatagttgaacataactggttt
gagaccttcattgttttcatgattctccttagcagtggtgcactggcatttgaagacata
tatattgatcagcgaaagacaattaagacaatgttggaatatgctgacaaggttttcact
tacattttcattctggaaatgcttctaaaatgggtggcatatggctatcaaacatatttc
accaatgcctggtgttggctagacttcttaattgttgatgtttcactggtcagtttaaca
gcaaacgccttgggttactcagaacttggtgccatcaaatctctcaggacactgagagct
ctgagacccctaagagccttatcgcgatttgaagggatgagggtggttgtgaatgccctt
ttaggagcaattccatccatcatgaatgtgcttctggtttgtcttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtattaacaccaca
actggtgacatgtttgacatcaccgaagtgaataatcattctgattgcctaaaactaata
gaaagaaatgagactgcccgatggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctctctttgcttcaagttgccacatttaagggatggatggatataatgtatgca
gcagttgactccagaaatgttgaactccagcctaagtatgaggagagtctatacatgtat
ctttactttgttattttcatcatctttgggtccttcttcaccttgaacctgtttattggt
gtcatcatagataatttcaaccagcaaaaaaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgccatgaaaaaattaggatcgaaaaagccacaa
aagcctataccgcgaccaggaaacaaatttcaaggaatggtctttgactttgtaaccaga
caagtttttgacataagcatcatgattctcatctgtctcaacatggtcacaatgatggta
gaaacagatgaccagagtgaatatgtgactaacattttgtcacgcatcaacctggtgttc
attgtgttgttcactggagagtgtgtgctgaagctcatctccctccgccattattatttt
accataggctggaatatttttgattttgtggttgtcattctctccattgtaggcatgttt
ctggctgagctgatagaaaaatactttgtgtcccccaccctgttccgagtgatccggctg
gccaggatcggtcgaatcttgcgtctgatcaaaggggcgaaggggatccgcacactgctc
tttgctctgatgatgtccctccctgccttgtttaacatcggcctcctgctcttcctggtc
atgttcatctatgccatctttggaatgtccaactttgcctatgtcaagagggaagttgga
attgatgacatgttcaactttgagacctttggcaacagcatgatctgcttgttccaaatt
accacctcggctggctgggacggattgctagcacctattctcaacagtaaaccacccgat
tgtgatcctaataaagttaatcctggaagctcagttaagggagactgtgggaacccatct
gtggggattttcttttttgtcagttacatcatcatctcctttctggttgtggtgaacatg
tacatcgctgtcatcctggagaacttcagtgttgcaactgaggagagtgcagagcccctg
agcgaggatgactttgagatgttctatgaggtttgggagaagtttgatcctgatgccacc
cagttcatggaatttgaaaaactgtctcagtttgcagctgctcttgaacccccactcaat
ttgccacaaccgaacaaactccagctcattgccatggatttgcccatggtcagtggggac
cggatccactgtcttgacatcttatttgcttttacaaagcgggtcctgggagagagcggg
gagatggatgccctccgaatacagatggaggagcgattcatggcttccaacccatcaaag
gtctcttatcagccaataactacgactttaaaacggaaacaagaggaggtgtctgctgtt
atcattcagcgtgcttacaggcgccaccttttgaagcgaactgtaaaacaagcttcgttt
acgtataataaaaataaaatcaaaggtggggccaatcttcttgtaaaagaagacatgata
attgacagaatcaatgaaaactcgattacggaaaaaaccgaactgaccatgtccaccgca
gcttgtccaccttcctacgatcgggtaacaaagccaattgtggaaaaacatgagcaagaa
ggcaaagatgaaaaagccaaagggaaataa
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integrated database retrieval system
