Vagococcus lutrae: M2919_00065
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Entry
M2919_00065 CDS
T08219
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vlu
Vagococcus lutrae
Pathway
vlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M2919_00065 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlu03019
]
M2919_00065 (rnr)
03016 Transfer RNA biogenesis [BR:
vlu03016
]
M2919_00065 (rnr)
Enzymes [BR:
vlu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M2919_00065 (rnr)
Messenger RNA biogenesis [BR:
vlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M2919_00065 (rnr)
Transfer RNA biogenesis [BR:
vlu03016
]
Prokaryotic type
tRNA degradation factors
M2919_00065 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
PF0610-like_N
SPMIP8
Nuf2
Motif
Other DBs
NCBI-ProteinID:
UQF11768
LinkDB
All DBs
Position
8307..10631
Genome browser
AA seq
774 aa
AA seq
DB search
MITIREKIMAFLKANPQKSYSIRELSQQLDCESSQAFKELVKEIAFLEEKKEIKLTSKGK
VTLPHRDTLLLEGHFHANERGFGFVTLDESEPDIFIPKEKTNYALDGDTVLIDIVSPGDY
LKDRMAEGKVVEIKKRHMTQIVGEFIPYDEEEIAETDLYGFVKPQDKKLANYRVYVAKEG
LQPVEGSICVVSITHYPEKGYDRALEGVILQTVGHKNDPGMDILTIVMQHGIPTTFPDEV
MEEVAAIPDEVLDSEREGRRDLRDRTIVTIDGAEAKDLDDAISFEKTERGTYRLGVHIAD
VAHYVRENSALNEEAYKRATSVYLTDRVIPMLPHRLSNGICSLNPNVDRLTLSCEMEIDS
NGKVMDYEIYESVIRTKERMTYDAVNEILSDEHSQASQDYAELGSFFKEMSELHFILEKM
RERRGAISFESKESYIQLDETGKPLSIVLRERGVAEKMIESFMLMANETIAAHYEQEGLP
FIYRIHEEPKTEKIQRFFEFLTNFDVVVKGTKDNIDPKELQKVMKHVEEMPEKPIINMML
LRSMQQAKYAAEPLGHYGLATDDYTHFTSPIRRYPDLIVHRLIKKYMHEPITPKMTNHLE
STLPDIALHSSIMERRSVDAERDTDSLKKTEFMADKVGQEFEGVISSITKFGIFVELPNT
VEGLIHVSQLKDDYYHFIENHLTLVGERTRRMYKIGQQVTVKLMKADVETREIDFELLNA
EQLADDPRIQTNIKRKNHEKRERNSGKRKRQTSHKSKHKAPFYKKVAKKKKKKK
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgataacaatacgagaaaaaattatggcgtttttaaaggccaatcctcaaaaaagctat
agtattcgagaattgagtcaacaacttgattgtgaaagcagtcaggcgttcaaagaactg
gtaaaagaaattgcttttttagaagagaaaaaggaaatcaaattaacctctaaaggaaaa
gtcacgttacctcatcgtgatacgctacttttagaaggacattttcatgcaaatgaacgt
ggctttggctttgtcacgctagatgaatctgaaccagatatatttataccaaaagaaaaa
acgaattatgctttagatggtgatacggtcttaattgacatcgtttcgccaggggattat
ttaaaagaccgtatggccgaaggaaaagtagttgaaataaaaaaacgtcatatgacacaa
atcgtcggagagtttatcccttacgatgaagaggaaatagcggaaacagatttatacggt
tttgtgaaaccacaagacaagaaattagcgaactatcgtgtttatgttgcaaaagaagga
ttgcaacctgttgaaggaagtatttgcgttgtttcgattacccattaccctgaaaagggt
tatgacagagcgttagaaggagttattcttcaaacagtcggacataagaatgacccaggt
atggatatattaacgattgtcatgcagcacggtattccgacgacttttcctgacgaagtg
atggaggaagtcgcagcgataccagatgaagtcttagacagtgagcgtgaaggacgacgt
gaccttagagaccgaacgattgtgacgatagacggagcagaggcaaaagatttagatgat
gcgattagttttgaaaagacggagcgtggaacgtatcgactcggcgttcatattgccgat
gttgcgcattatgttagagaaaacagtgcgttgaatgaagaagcgtataaacgtgccacc
agcgtttatttaactgaccgtgtcattcccatgttacctcaccgactatctaatggcatt
tgcagcttaaatccaaatgtcgaccgactaacattaagttgtgaaatggaaatcgatagt
aatgggaaagtgatggactatgagatttatgaaagtgtaattcggacaaaagagcgtatg
acgtatgacgctgttaatgaaatactttctgatgaacactcacaagcaagtcaagattat
gcagaacttggttcattttttaaagagatgtctgagttgcactttatattagaaaaaatg
cgtgaacgacgtggagctatctcgtttgaaagtaaggaatcttacattcagctagatgaa
actggcaaaccactttcgatagttttgcgagaacgcggtgttgctgaaaaaatgatagaa
tcatttatgttaatggccaatgaaacgattgctgctcattatgagcaagaaggattacct
tttatttatcggatacacgaagaacctaaaacggaaaaaattcaacgtttctttgaattt
ttaacaaactttgatgttgtggtaaaaggcacgaaagacaatatcgatccgaaagaactt
caaaaagttatgaaacatgtggaagaaatgccagagaaaccaattattaacatgatgtta
ttacgaagcatgcagcaagctaaatacgcagcagaaccactaggccactatggattagcg
acagatgactatacacattttacgtcgccaattcgacgttatcccgatttaattgtgcat
cgtttaattaaaaaatatatgcacgagccgattacacctaagatgacgaatcacttagaa
agcacgctacctgatattgccttacatagctcaatcatggaacgtcgttcagtagatgct
gaacgtgatacggatagtctgaaaaagacggagtttatggcagataaagtggggcaagag
tttgaaggggtgattagctctattacgaagtttggtatttttgtggaattaccgaataca
gtagaaggattgattcatgttagtcagttaaaagatgattactatcactttattgaaaat
catttgacattagtaggtgaacgcactcgtcgcatgtataaaattggccagcaagtgaca
gttaaactaatgaaagcagatgttgagacgcgagaaattgactttgaattgttgaatgct
gagcaattggcagatgatccgaggattcaaacgaatataaagcgaaaaaatcatgagaaa
cgtgaaagaaattcaggaaaaagaaagcgtcaaacatctcataaatcaaaacataaagct
cctttttataagaaagtggctaagaagaagaaaaagaagaaataa
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