Vagococcus lutrae: M2919_01900
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Entry
M2919_01900 CDS
T08219
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vlu
Vagococcus lutrae
Pathway
vlu03410
Base excision repair
vlu03430
Mismatch repair
vlu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M2919_01900 (recJ)
03430 Mismatch repair
M2919_01900 (recJ)
03440 Homologous recombination
M2919_01900 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vlu03400
]
M2919_01900 (recJ)
DNA repair and recombination proteins [BR:
vlu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
M2919_01900 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
M2919_01900 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M2919_01900 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UQF12102
LinkDB
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Position
complement(396236..398545)
Genome browser
AA seq
769 aa
AA seq
DB search
MKEAMYTWKKLPLDNHSDVEKWLAERDLPTSFAPLVQQQDIKNEDALDQYLAPRLDELAD
PFLMYDMDRAIERLQQAIMENEKIIIYGDYDADGITSSTVMKEAIEMVGGEVDVYLPNRF
KDGYGPNLAVYERLVAEDYQLILTVDNGVSGHEAIAYAQAQGVDVIVTDHHALPDVLPEA
YAVIHPAHPKGSYPFKDLAGVGVAFKFASALLEDAPLELLDLVAIGTVADLVSLTGENRL
LVKHGLEILKQTERVGLQVLYEELGIDTTQLGSEDIGFRIAPRLNALGRMEEAIVGVELL
STFEPEHARMLVAQVETTNQARQKTVQLINQEVDTLIEAEKSDIYVLANKGWHEGVLGIV
ASYVVEKTQRPAIILSISEEGHIAKGSARSVPGVNIFNLLKEVAPLLQQFGGHDMAAGLS
VSVDKLAELKAALNKLIKTDNYDLEQKETLTVLEVTQSEMLSIDWIEKLAVLEPFGTDNP
KPLLLLEKARPMDARQIGIDHRHLKAQLQHKVAERPLDLIGFGFGEAYDSFSMADEVDVV
GTLSINEWNGVRQPQLMLKDFKLQGTQLLDFREQAHKVKDIMRDNTVYFYFKEDTAKQFS
FIPTAQLIAVDESQPIEQLDIEAGTSAVFLDCPVEAETLRTIVNLTEFYKIYLILLSETQ
AYLTGMPSRQDFAALYRVIQSSQEIDVRNKLPMLEKYLRIPISKIKFMINVFFDLNFVTI
EDGLMTKVAEPVSTPLEESRYYKERQKQMKTEEFLLYGDINQIKDWLHQ
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaagcaatgtatacttggaaaaaattaccgttagataatcatagtgacgtagaa
aaatggttagctgaacgagatttaccaacaagttttgcacctttagtgcaacaacaagat
attaaaaatgaagatgcattagatcagtatctagcccctcgcttggatgaattggctgat
ccttttttaatgtatgatatggatagagcgatagaacgcttgcaacaagcgattatggaa
aatgaaaaaatcatcatttacggtgattacgacgcagacggcattactagtagtacggtg
atgaaagaagcgattgagatggtgggtggcgaagtcgatgtctatttgccaaatcgtttt
aaagatggttatgggcctaacttagccgtctatgagcgactagtagcagaagactatcaa
cttattttgaccgtcgacaacggcgttagcggccatgaggcgatagcgtatgctcaagct
caaggtgttgatgtcatagtgacggaccatcacgcgttgcctgatgtattacctgaagcg
tatgctgtgatacatcctgcccatcccaaaggaagctacccttttaaagatttagcaggg
gtgggagtagcgtttaagtttgcttctgcactattagaagacgctccattagagttgctt
gatttagttgcgataggaacggttgctgacttagtatcactgacaggtgaaaatcggtta
cttgtgaagcatggtttagaaattttaaaacagacggagcgagtcggtttacaagtgttg
tatgaggaattaggaattgacaccactcagttaggctcagaagatatcggctttcgaatt
gccccccgtcttaatgcattgggcagaatggaagaggctattgtcggcgtcgagttactt
tcgacctttgaacctgaacatgcacgaatgcttgtcgcacaagtcgaaacaacgaatcag
gcgcgtcaaaaaacggtacaactcatcaatcaggaagttgatacgttaatagaagctgaa
aaatcagatatctatgttctcgcaaataaaggatggcatgaaggggttttaggaatagtg
gcgagctatgttgtagaaaaaacgcaacgaccggctattattttatcaatttctgaagaa
ggccacatagcgaaaggctcggcacgtagtgttccaggagtcaatatttttaatctatta
aaagaagtagcaccgcttttacaacaatttggtgggcatgatatggcagcaggcttaagt
gtttcagtagacaagttagcggagttgaaagctgcattaaataagctcatcaagacagat
aattatgatttagagcaaaaggagacattgaccgttttagaagtcacacaatcagagatg
ttaagtattgattggattgaaaaacttgcggtattagagccattcggaacggataatcct
aaaccgttattattgttagaaaaagctcgtccaatggatgctcgtcaaattggcattgac
catcgacatttaaaagcacagcttcaacataaagtagctgaacgccctctagatttaatc
ggatttggctttggtgaagcttatgacagctttagcatggcagatgaagtcgacgtagtg
ggtacattatcgattaacgagtggaatggagttagacagccacagctaatgctgaaagat
tttaaattacaaggcacgcaattattagactttcgagagcaagctcataaagtaaaagat
atcatgcgtgataacactgtctatttctattttaaagaagacacagctaagcagttttct
tttatacctactgcacaattaatcgcagtggatgaatctcagcctattgaacagttagat
atcgaagcagggactagtgcggtttttttagactgtccagtcgaagcagaaacgttacgt
acgatagtaaatctgacagagttttataaaatctatttaatactcttaagtgaaacacaa
gcctatttaacaggtatgccatctcgtcaggattttgctgccctctatcgcgtgatccaa
tccagtcaggaaatagacgtgcgaaataaactaccaatgcttgagaaatatttaagaatt
ccaatttctaagataaagttcatgataaacgtgttttttgatttgaattttgttacaata
gaagatggtttgatgacaaaagtagcggaaccagtcagcacacctcttgaagaaagtcgt
tattataaagaacgacaaaaacaaatgaaaactgaagaatttttattatatggtgatatc
aatcaaataaaagattggttacatcaatag
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