Vagococcus lutrae: M2919_02180
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Entry
M2919_02180 CDS
T08219
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vlu
Vagococcus lutrae
Pathway
vlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M2919_02180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlu03019
]
M2919_02180
03400 DNA repair and recombination proteins [BR:
vlu03400
]
M2919_02180
Enzymes [BR:
vlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M2919_02180
Messenger RNA biogenesis [BR:
vlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M2919_02180
DNA repair and recombination proteins [BR:
vlu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M2919_02180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
RecQ_Zn_bind
AAA_22
DUF3269
LUD_dom
Motif
Other DBs
NCBI-ProteinID:
UQF12154
LinkDB
All DBs
Position
complement(458468..459934)
Genome browser
AA seq
488 aa
AA seq
DB search
MKDLQSALSHYFGYQDFRKGQRETIQAVMQQRNVLAILPTGTGKSLCYQLPTLLLDGLTV
VVSPLIALMDDQVQSLKQKGVFSAVTYNSSLDFNEKRALLSSLSQQKFLFISPESLATSA
VIEALQRCSISLFVVDEAHCISEWGLDFRPEYEQIPQIVAQLTIKKCLALSATATAAVQQ
DIEQKLFLNEEVKVIRYSVDRPNITYSVVTCTTKNEKEDFIDSFLARHTSQQGILYFSSK
AEAVRISDWLRHERHQSSAFYHSDLSHQDRRLIQEQFLKGDVRILCATSAFGMGIDKSDI
RFVIHFHLPSSLEALVQESGRAGRDGKLAHSIVLYQPADWHIHRHLASESLAEYRDFKAR
MESAQKDVQSFTDLQKTWYDHYQQGWLSLSRLEKMWEKKLQQRERQATIMRRWLEMTNCR
RLGIHHYFESGMFPAPIKNEHCCDNCQLDIWQTRLPETEKVESHDSTEWQTVLKKLFNVG
YSSQNIVK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttacagtcggctttatcacactattttggctatcaagactttcgaaaaggc
caacgtgaaacgattcaagccgttatgcaacaacggaatgtcttggcaatattgccgacg
ggaacgggcaaatcgttatgttatcagttaccgactttattgttagacggtttgacggtc
gtcgtttctcctctgattgcattaatggatgaccaagtacagtcgctgaaacaaaaaggt
gttttttcggcagttacctataatagttcgttagattttaatgaaaaacgagcattgctt
tcctctctttctcaacaaaagtttttgttcatcagtccagaaagcttggcaacctcagct
gttatcgaagctcttcagagatgctcgattagtttgtttgttgtagatgaggctcactgt
atttctgaatgggggttagattttcgtccagagtatgagcagattcctcaaattgtcgca
caattaactattaaaaaatgtctagccctttcagctactgccactgctgccgtccaacaa
gatatcgaacaaaaattatttttgaatgaagaggtaaaagtcatacgctattcggttgac
cggcctaatattacctactcggttgtgacatgcacgactaaaaatgaaaaagaagacttt
atagattcatttttagcccgtcatacttcgcaacaaggtattttatatttttctagcaaa
gcagaagccgtgcgtattagcgattggttgcgtcatgaacgtcatcaatcaagtgctttt
tatcatagcgatttatctcatcaagatcgtcgattgattcaagaacagtttttaaaaggc
gacgtgcgcatactctgtgcgacgagtgcttttggtatggggatagataaatcagacatt
cgttttgtaatacattttcatttgcctagtagtttagaagcgcttgtgcaagagtctggt
cgagcgggaagagatggcaaactcgctcacagcattgtactgtatcaaccagctgactgg
cacatacatcgtcatttagcaagtgagagcttggccgaatatcgtgattttaaagcacgt
atggaaagtgcacaaaaagacgtccaatcctttactgatttacaaaaaacgtggtatgac
cattaccaacaagggtggctgtcgcttagtcgacttgaaaaaatgtgggagaaaaaacta
caacaacgtgaaagacaagctactattatgcgtaggtggttggagatgacgaattgtcgc
agactgggtattcatcattattttgaaagtgggatgtttccagcgcccatcaagaacgag
cattgctgtgataattgtcagctagatatttggcaaacacgtttaccggaaactgaaaaa
gtagaaagtcatgattcgacagaatggcaaacggtattaaaaaaactttttaacgttggc
tattcaagtcaaaatattgtaaaataa
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