Vagococcus lutrae: M2919_03745
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Entry
M2919_03745 CDS
T08219
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vlu
Vagococcus lutrae
Pathway
vlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M2919_03745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlu03019
]
M2919_03745
03009 Ribosome biogenesis [BR:
vlu03009
]
M2919_03745
Enzymes [BR:
vlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M2919_03745
Messenger RNA biogenesis [BR:
vlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M2919_03745
Ribosome biogenesis [BR:
vlu03009
]
Prokaryotic type
rRNA helicases
M2919_03745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
UQF12445
LinkDB
All DBs
Position
complement(793406..794944)
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AA seq
512 aa
AA seq
DB search
MKRDKLGGSYLKFKDLGLIPELLEAVQRAGFEEATPIQEGTIPLALEGKDVIGQAQTGTG
KTAAFGLPMLQKIDTSAKEVQGLVIAPTRELAIQTQEELYRLGRDKKVKVQVVYGGADIG
RQIRSLKERPHIVVGTPGRLLDHINRRTLKLGNIETLVLDEADEMLNMGFLEDIEAIISK
TPAERQTLLFSATMPKSIKDIGVKFMKDPEHIKIKAKEMTASLIDQYYVRCKDFEKFDIM
TRFFDVQAPELTIVFARTKRRVDELSRGLEIRGYRAEGIHGDLTQQKRMSVLRGFKNGAI
DVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKDGMSVTFVTPNEMGY
LRVIEDLTKRKMSPLRPPTQQEAIQGQLGIAVNTIQDELQKNGLDHYQKTATDLLEQYEA
EDLVALLLKTITKDDASEAPVKITPERPLPQNRRNNKGGGGQRGKGGQKRGGRYNDRRNN
KGGNGKKRYDNKGKGHSKDKSKRDFVIRTKNK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaagagagacaaattaggaggatcttatttgaaatttaaagatttaggtttaatacct
gagctgttagaagcagttcaacgcgcaggatttgaagaagcaacacctatccaagaaggc
acgattccattggcattagaaggtaaagatgtgattggacaggcgcaaacgggaactggt
aaaacagcagcatttgggttgcctatgttacaaaaaatagatacgtcagcaaaagaagtt
caaggcttagtcatcgcaccgacacgtgagttagctattcaaactcaagaagagctatat
cgtttaggtcgtgacaaaaaagtgaaagttcaagttgtctacggtggcgcggatatcggc
cgtcaaattcgtagcttgaaagagcgcccacatattgttgtgggaacaccaggtcgtttg
ttagaccatattaatcgtcgtacgttaaaacttggtaacattgaaacattagtattagat
gaagcagatgaaatgcttaatatgggcttcttagaagatattgaagcaattattagcaag
acaccagctgaacgccaaactttactgttttcagcaactatgccaaaaagcattaaagat
attggggttaaattcatgaaagacccagaacatatcaaaatcaaagctaaagaaatgaca
gcgagtcttattgaccaatactatgttcgttgtaaagactttgaaaaatttgacattatg
acgcgtttctttgacgtacaagcacctgaattgactatcgtctttgctcgtacaaaacgt
cgtgtagatgaattatcacgtggcttagaaattcgcggttaccgtgcagaaggaatccat
ggcgatttaacgcaacaaaaacgtatgagtgttttaagaggctttaaaaacggagctatt
gacgttttagtggccacagatgttgcagcacgtggtttagatatctcaggtgtgacacat
gtgtataactttgatattccccaagatccagaaagctacgttcaccgtattggtcgaact
ggccgagcaggtaaagatgggatgtctgtgacatttgtaacgccaaatgaaatgggctac
ttgcgtgttattgaagacttaactaaacgtaaaatgtcacctttacgcccacctacgcaa
caagaagctattcaagggcaattgggaatagctgtcaatactattcaagatgaattacaa
aaaaatggcttagatcattatcaaaaaacagctacagatttattagagcaatatgaagca
gaagatttagtggcgttattattaaaaacaatcacaaaagacgatgcttcagaagcgcct
gttaaaattaccccagagcgtcctttaccacaaaaccgtcgcaacaataaaggtggcgga
ggccaacgtggaaaaggtggtcaaaaacgcggtggacgttataatgaccgtcgtaataac
aaaggcggcaatggcaaaaagcgttatgataacaaaggcaaaggccacagcaaagataaa
agtaaacgtgattttgtgattcgcacgaagaataaataa
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