Vagococcus lutrae: M2919_04270
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Entry
M2919_04270 CDS
T08219
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vlu
Vagococcus lutrae
Brite
KEGG Orthology (KO) [BR:
vlu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vlu03009
]
M2919_04270 (rlmD)
Enzymes [BR:
vlu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
M2919_04270 (rlmD)
Ribosome biogenesis [BR:
vlu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
M2919_04270 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_15
PrmA
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_12
Taeniidae_ag
TRM
Methyltransf_4
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
UQF12541
LinkDB
All DBs
Position
complement(897556..898920)
Genome browser
AA seq
454 aa
AA seq
DB search
MTVKKNRQLTVKIEDLTHEGMGVAKVEGYPLFIENALPGEEVLVHVVKAGKKFGFAKVID
YLTESHQRVSQTDDVLIRTGIAPLSHLTYEQQLLFKQTQVKRNLSKIAQLDDVSVLETIG
MTDPWQYRNKAQVPFRRVNGRGETGFYRKNSHDLIPIEDYQIQHTEIDKVIAIVRDALND
YRIKPYNEEEHTGLIRHIIVRRGFYTGEMMVGFVTRTKKFFDSDRVVKKILEQAPEVTTI
VQNINEDKTNVILGNETVTLYGDGFIHDRLFDKTYRLSLNSFFQVNTQQAEVLYEQAMNF
AELNSSDIVIDAYCGIGTIGMSLANRVAHVYGMDVVPQAIADAKENQKLNDIKNVTFETG
KAEEVLPSWVAEGIKANVLIVDPPRKGLDPSFIETACELAPDRIVYVSCHPGTFARDVKL
FGEKGYELTKVQPVDMFPQTTHVETVVLLQRKII
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgacagtgaaaaaaaatcgtcaactgacggtgaaaattgaagacttaacacatgaagga
atgggcgtagcgaaagttgaagggtatcctctgtttatcgaaaatgccttaccgggagaa
gaggtacttgtacatgtcgtgaaagcaggcaaaaagtttggctttgctaaagtcatcgat
tatctgactgaaagtcatcagcgtgtgtctcagacagatgatgtgcttatccgaacaggt
attgcgccattaagtcacttaacgtatgagcagcaacttctttttaaacagactcaagtc
aagcgtaatctaagcaagatagcgcaattagatgacgtctctgtcttagagacaatcgga
atgacagacccttggcagtatcgaaataaagctcaagttccttttcgtcgcgtcaacgga
cgaggagaaaccggattttatcgtaaaaattctcatgatttaataccgatagaagactat
cagatacaacatactgaaatagataaggttattgccatcgtgcgtgacgctttgaatgat
tatcggattaaaccatataatgaagaggagcatacagggttaatccgccacattattgtc
agacgtggattttatacaggcgagatgatggtgggctttgtcacacgtacgaagaaattt
tttgatagtgaccgtgttgtgaaaaagattttagaacaagcacctgaagtgaccacgatt
gttcaaaatattaacgaagataaaaccaatgtgatattaggaaatgaaacagtaacatta
tatggcgatggctttatacatgaccgtttatttgataagacttaccgtttatcacttaat
tctttcttccaagtgaatacccagcaagcagaggtgctgtatgaacaagcaatgaacttt
gcagaactgaattcgtcagatattgtcatagatgcttactgtggaattggaacgataggg
atgtctcttgccaatcgtgtggcgcacgtttatggtatggatgttgtcccacaagcgatt
gcggatgcgaaagaaaatcagaagttaaatgatattaagaatgtcacatttgaaacagga
aaagcggaagaagtgttaccaagctgggtggcagagggtataaaagcgaatgttctgatt
gtcgacccaccacgtaaaggattagacccaagttttattgagacggcttgtgagctagct
cctgacagaatcgtttatgtatcctgtcatccgggaacatttgctcgtgatgtcaagtta
tttggcgaaaaaggctatgaattaacgaaagtacaaccggttgatatgtttccacaaacg
acacatgtggagacggttgtgttgctacaaagaaaaattatatag
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