Vagococcus lutrae: M2919_07905
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Entry
M2919_07905 CDS
T08219
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vlu
Vagococcus lutrae
Pathway
vlu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M2919_07905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vlu03400
]
M2919_07905 (mfd)
Enzymes [BR:
vlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M2919_07905 (mfd)
DNA repair and recombination proteins [BR:
vlu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M2919_07905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_16
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UQF11409
LinkDB
All DBs
Position
1631019..1634564
Genome browser
AA seq
1181 aa
AA seq
DB search
MELIKKVMNSPTMQDWLSGMEQKQTQLVTGLTGSAKTLTLASLYYGQKRKLVVVTPNLHQ
MNQLLDDLSHLVPEEELYSYPVNEVLAVEMGFASPEAIADRIEALSFLYSNRTGILVVPA
AGARHYLPSKETWQRYEKELAVGDTVEIEQLTQDLITMGYVRESMVGKPGEFSVRGGIVD
VYPLTSDYPFRIDFFDDEIDSLRYFEADTQRSIENVEKIKIKPATDVLIVPEVYEPAADK
LQKDVHAYTSKLKDEEAKQATTHYMDSLTTQWRAGERTLEDRHFIYYLMPDARTMIEHLA
ADDAVILDDYSRILEVEKEMLTEQGEWISEQLALHKLLPSVSYGREIREILKKTAVATSY
FSVFQKGMGNLKFQQIHHFQVRTMQQFFGQMGLFEVELNSWKKKQQTVIILTNTIEKSQK
IQQLLREHAIEYVVQHDGPILEQAVQIRLGELQTGFELIDEKLVVVTEHELLQVKKRPKA
RKRAISNAERLKSYNELKTGDYVVHVNHGIGKYIGMETLEMDGVHQDYMTIVYQNNDKLF
IPVTQLDLIQKYVASESKTPKINKLGGTEWTKTKRKVASKVEDIADDLIQLYAAREAEKG
FAFSPDDNLQAAFDNAFPYSETDDQLRSIQEIKRDMEKAKPMDRLLVGDVGYGKTEVALR
AVFKAVRDNKQVAFLVPTTILAQQHYETMLERFADFPVNVELLSRFRTKKQQTETIEKLK
KGQADVVVGTHRILSKDVVFQDLGLLIIDEEQRFGVKHKERLKQLRSEVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPSNRYPVQTYVMEQNIGAIRDGIERELARSGQVFYLHNRVD
TIEQKVGELQQLVLDARIAFAHGQMTEVQLENILFDFINREYDVLVTTTIIETGVDIPNV
NTLFVENADHMGLSQLYQLRGRVGRSNRVAFAYLMYEPQKVLTEVSEKRLQAMKDFTELG
SGFKLAMRDLSIRGAGNILGSQQHGFIDSVGFDLYTQMLNEAVQRKQGKQTTAPKTVVEI
QLGVDAYIPNAYIPDERQKIEIYKRVRELENQAMYEELVDDVMDRFGEFPDEVAYLLAIG
RIKMNSERALIEKIEKQGQKVTLVLSVAGTKTYMVEQLFKALAVTKLKADMRMNDEQMHI
ILHLPKVMMTELWLNEIGKVTEALQKEREEAMTKQTEAKDE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatcaaaaaagttatgaatagtcccacaatgcaagattggttatctgggatg
gagcaaaaacaaacacaattagtgacagggttaacgggatcagctaaaacgctaacgtta
gcctctctttactatggtcaaaaaagaaaactcgttgtcgtaaccccaaatcttcatcaa
atgaatcaattattagatgacttaagccatcttgttccagaagaagagctgtacagttat
ccggtaaatgaagtgttggctgtggaaatgggctttgcctcaccagaggctattgctgat
cggatagaagcattatcatttctttacagtaatcgcacgggtattctagttgtaccggct
gctggtgcgcgtcactatttgccaagtaaagaaacatggcaacgttatgaaaaagagtta
gcagtaggcgatacagtagaaattgaacaattgacacaagatttgattacgatgggttac
gtccgtgaaagtatggtagggaaaccaggcgagtttagtgtgcgcggtggtattgtagat
gtgtatcctttaacatcagattatccatttcgtattgacttttttgacgatgaaattgat
tcgctaagatactttgaagctgatactcaacgctctattgaaaatgtagaaaaaattaaa
atcaaaccagccacagatgtcctaatcgttccagaagtctacgaacctgctgcagataaa
ctacaaaaagacgtacatgcttatacatctaaactaaaagatgaagaagcaaaacaagca
acgactcactatatggatagtttaacgacacaatggcgtgcaggtgaaaggactctggag
gatcgtcactttatttactatctgatgccagacgctcgtacgatgattgagcatttagca
gcagacgatgcggttattttagatgattatagtcggattttagaagtggaaaaggagatg
ttaactgagcagggtgagtggattagtgaacagttagccttacataagttacttccttcc
gtgtcgtatggtcgggagattcgcgaaattcttaaaaaaactgctgtggcaacaagttat
ttctcagtgtttcaaaaagggatgggaaatcttaagtttcaacagattcatcattttcaa
gtgagaacgatgcagcagttctttgggcagatgggcttatttgaagtcgaattaaatagc
tggaagaaaaaacagcaaacagtgattattttaactaatacaatagaaaaaagtcagaag
attcagcaattgttaagagaacacgccattgaatatgtggtacaacatgatggtccgata
ctcgagcaagccgttcaaattcgccttggagaattgcagacaggctttgaattaattgat
gaaaaactggtagtagtcaccgaacatgaacttttacaagtgaaaaaacgaccgaaagca
cggaaacgcgccatttctaatgcggaacggttgaaaagttataatgaattaaaaactggc
gattacgttgtgcacgtgaatcacggaattggtaaatatataggaatggaaacgctagag
atggatggtgtccatcaagactacatgacgattgtttaccaaaataacgataaactcttt
attcccgtcacacagttagatttgattcaaaagtacgttgcctctgagtccaagacaccg
aaaatcaataagttaggtgggacggaatggactaaaacgaaacgcaaggtagcttccaaa
gtggaggatatagcggatgatttaatccaactatatgcagcacgtgaagcagaaaaaggc
tttgctttttcaccagatgataatttgcaggctgcctttgataacgcttttccttatagt
gaaacagatgatcagttaagaagtattcaagagattaagcgtgacatggaaaaagcgaaa
ccgatggaccgtttattagtgggagatgttggctacggtaagacggaggtcgcgttgcga
gcagtgtttaaggctgtgcgtgataataaacaagtcgcgtttttagtaccaacgacaatc
ttggcacaacaacactatgaaacgatgttagaacggtttgctgattttcctgtaaatgtc
gagttgttaagtcgctttcgaacgaaaaaacaacagacagaaacgattgaaaagttgaaa
aaagggcaagcggatgtggtagtcggaacacatcgaattctttcaaaagatgtcgtcttc
caagatttaggcttgttaataatagatgaggaacaacgatttggagtgaaacataaagaa
cgcctaaaacaattgcgctcagaagtcgatgttttaaccttaactgcaacgcctattcca
agaacgttgcatatgtcaatgcttggtgttcgtgatttgtccgtcattgaaacacccccg
tctaatcgctatcccgtccagacgtatgtcatggaacaaaatattggggcgattcgagat
ggtattgaacgcgaattagcacgctcaggacaggtgttctatctacacaaccgtgttgac
acgattgaacaaaaagtgggtgagttacaacagttagtgctggacgcacggattgcattt
gcacatggtcagatgacagaagtgcaattggagaatatactttttgattttattaatcgt
gagtatgacgtgttagtgaccaccacgattattgaaacaggagtagatattcctaacgtg
aatacgttgtttgtggaaaatgccgaccatatgggcttatctcagctttatcaattgcgt
gggcgtgtggggagaagtaatcgtgtagcttttgcctatttgatgtacgaaccacaaaaa
gtcttaactgaagtcagtgaaaaacgacttcaagcgatgaaagattttactgaactagga
tctggttttaagttagccatgcgtgacctatccattcgcggagctggcaatatcttaggc
tctcaacagcatgggtttattgattccgtcggttttgacttatatacacaaatgttaaat
gaagccgttcagcgtaagcaaggtaagcaaacgactgcaccgaaaacagtcgttgagatt
cagttaggagtcgatgcttatattcctaatgcctatattccagacgagcgacaaaaaatt
gaaatttataaacgcgttcgtgagttggaaaaccaagcgatgtacgaggaattagtagac
gacgttatggaccgttttggtgaatttccagacgaagtggcatatttacttgcaatcggt
cgtattaaaatgaatagtgaacgtgctttgattgaaaaaatagagaagcagggacaaaaa
gtaacattagtgctaagtgtggcggggacgaaaacgtatatggttgaacagctctttaaa
gcactggctgtaaccaagttgaaagccgacatgcgaatgaacgatgaacaaatgcacatt
attttacatttaccaaaagtcatgatgaccgagttgtggttaaatgaaattggtaaagtc
acggaagctttacaaaaagagcgtgaagaggctatgacgaaacaaacggaggcgaaagat
gagtaa
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