Vagococcus lutrae: M2919_08640
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Entry
M2919_08640 CDS
T08219
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vlu
Vagococcus lutrae
Pathway
vlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M2919_08640 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlu03019
]
M2919_08640 (pnp)
03016 Transfer RNA biogenesis [BR:
vlu03016
]
M2919_08640 (pnp)
Enzymes [BR:
vlu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
M2919_08640 (pnp)
Messenger RNA biogenesis [BR:
vlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M2919_08640 (pnp)
Transfer RNA biogenesis [BR:
vlu03016
]
Prokaryotic type
tRNA degradation factors
M2919_08640 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
Dockerin_1
DUF3294
Motif
Other DBs
NCBI-ProteinID:
UQF11523
LinkDB
All DBs
Position
1789216..1791330
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AA seq
704 aa
AA seq
DB search
MTEKKVFSMDWGGRPLSVEVGQLAKQANGSVLVRYGDTVVLTAAVASREPKDVDFFPLTV
NYEEKMYAAGKVPGGFIKREGRPSEAATLTARLIDRPIRPMFADGFRNDVQITNIVMSVE
QDCTPEMSAMLGSSLALCISDIPFNGPIAGVNVGRVNGEYILNPTVEQTALSDIELSVAG
TKDAINMVESGAKEVTEEDMLGALMFGHEAIKELVAFQEKVVAEVGKEKMDIQLLQVSED
LEAEIMTAYKDAMVAAIQTEEKLAREVNIDAVKAEIMEVYEAKFADDEDSAKKLKEVRQI
TEDLEKNEVRRLITKEKIRPDGRQVDEIRPLAGEVGLLPRVHGSGLFTRGQTQALSTVTL
APLGEHQIIDGLGTEESKRFIHHYNFPQFSVGSTGPTRGPGRREIGHGALGERAMAQVIP
SEEEFPYMIRVVSEVLESNGSSSQASICGGILALMDAGVPIKAPVAGIAMGLVMDGDDYT
ILTDIQGLEDHLGDMDFKVAGTEAGITALQMDIKIEGITEQILTEALTQAKKARMEILDV
LTATIPEPREELSEYAPKIEMIQIKPEKIKDVIGKGGDTINGIIDETGVKIDIDQDGNVS
IASSDAAMIKRAIQIIEELTKEVEVGEVYLGKVVRVEKFGAFVNLIKGKDALVHISQLAN
ERVNKVEDVVKVGDEVLVKVTEIDRQGRVNASRKAMLKEDEATE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaaaaaagtattttcgatggactggggcggacgccctctatcagtagaagta
ggacagttagcgaaacaagcaaatggttctgttttagtgcgttatggtgacacggttgta
ttgacagcagctgtagcatcacgagaacctaaagatgtagactttttcccactgactgta
aactacgaagaaaaaatgtatgcggcaggtaaagttcctggtggatttatcaaacgtgaa
ggacgcccaagtgaagcagcgacattaacagctcgcttaattgaccgtccaattcgcccg
atgtttgcggatggtttccgtaacgacgtgcaaatcacgaatatcgtcatgagtgtggaa
caagactgtacaccagagatgagtgcgatgttaggttcatcattggcactttgtatttca
gatattccgtttaacggtccgatagctggagtcaatgttggacgtgtgaatggcgaatac
attttaaacccaacagtcgaacaaacagcgttatctgatattgaattaagtgtagcaggt
acaaaagatgccattaacatggttgaaagtggcgctaaagaggtaacggaagaagatatg
ttaggtgccttgatgtttggacatgaggcgattaaagaattagtggcattccaagaaaaa
gtagtagctgaagttggaaaagaaaaaatggatatccaactattacaagtctcggaagat
ttagaagcagaaattatgacggcttataaagatgcgatggtagcagctattcaaacagaa
gaaaaattagcacgtgaagtaaatatcgatgcggtcaaagcagaaatcatggaagtctat
gaagctaagtttgcagacgatgaagatagtgcgaaaaaattaaaagaagtccgtcaaatt
acggaagacttagagaaaaatgaagtccgtcgtttaatcacaaaagaaaaaatccgtcca
gacggtcgtcaagttgacgaaattcgtccacttgctggagaagttggattgttaccacgt
gtacacggttcaggattatttactcgcggacaaacacaagctctatctaccgtcacatta
gccccgctaggagaacatcaaattattgatgggttgggaacggaagaaagcaaacgtttc
attcatcactataacttcccacaattctctgtcggttcaacaggtccaacgcgtggtcct
ggtcgacgtgaaatcggtcatggtgctttaggtgaacgtgcgatggctcaagttattcct
tctgaagaggaattcccatacatgattcgtgtggtttctgaagttttagaatcaaacggt
tcttcctcacaagcaagtatctgtggtggtattttagccttaatggacgctggtgttcca
attaaagcgccagttgcgggaattgcaatgggcttagttatggacggcgacgactatacg
attttaacggatattcaaggtttagaagatcacttaggggatatggactttaaagtagcc
ggaacagaagcaggtattacggcgttacaaatggatattaagattgaagggattacagaa
caaatcttaacagaagcattaacgcaagctaaaaaagctcgtatggagattttagatgtc
ttgacagccactattcctgaaccacgtgaggaattaagtgagtacgctcctaagattgaa
atgattcaaattaaacctgaaaaaatcaaagatgttattggtaaaggtggcgacactatt
aacggtattatcgatgaaacaggggttaaaattgatatcgaccaagatggtaatgtcagc
attgcttcttcagatgcagcgatgattaaacgtgctatccaaattattgaagagctaaca
aaagaagtggaagttggcgaagtatacttaggaaaagttgtgcgtgttgaaaaatttggt
gcttttgtgaatctgattaaagggaaagatgcccttgttcatatctcacaattagccaat
gaacgtgtaaataaagtagaagatgttgtaaaagtgggcgatgaagtcttagtcaaagtc
actgaaattgaccgtcaaggccgagttaacgcatcacgtaaagctatgttaaaagaagac
gaagcaacagaataa
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