Micromonospora maris: VAB18032_00215
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Entry
VAB18032_00215 CDS
T01471
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vma
Micromonospora maris
Pathway
vma03420
Nucleotide excision repair
vma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VAB18032_00215
03430 Mismatch repair
VAB18032_00215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vma03400
]
VAB18032_00215
Enzymes [BR:
vma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAB18032_00215
DNA repair and recombination proteins [BR:
vma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAB18032_00215
MMR (mismatch excision repair)
Other MMR factors
VAB18032_00215
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
AEB47127
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Position
complement(5720055..5723399)
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AA seq
1114 aa
AA seq
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MTQPALFSPGAPAPRAADSGPRYTPVELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGS
GKTETMAARVVWLVANSYVRPEQVLGLTFTRKAAGELGHRVRTRLDQLIRRLGRRGRDPL
DDPLAGEPTVATYHSYAGRIVTEHGLRAGYEPSTRLLTEASRWQLVDLIVRNYDGDMSEV
DRMPSTVTDAVLALAGELDEHLVEPDDLAAWTGRFFADVQSRPGRIYADVRKALALQQTR
LKLLPLVRAYARRKDDFEAMDFADQLARAARVARDHPGVGEIERDRYRVVLLDEYQDTSH
AQVVLLRALFGDGHPVTAVGDPCQSIYGWRGASAGTLDRFPTEFVGSDGSPARVLGLTTS
WRNRPEILAVANALATPLRAAGARVPELHAALSVDEPIAHRSPRGAAAGTVHCALLSTYA
DEADWIADSLLAAWQGAARMPRALPEQIPVTARPTTAVLVRLRSQIPAIAAALRERGLPV
EVVGLGGLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRAKAIA
AARRQLADDGDPEIVPDRLDEATLVEALADLGPAQAYSAEGYARLRAYARELGLLRYRLD
QSLPELIADIERTTGLDVEVAVRAGGEGAGDAGLARAHLDALGDVAARFSGETPGATLAG
FLAYLAAAEDEERGLAPGEVEVVEGAVQILTAHAAKGLEWDVVAVAGLSRGVWPGPVRNS
DHWLGGLGVLPFPLRGDADGLPELALAEAADQRAVARTMAEFTDAWRAHDEREERRLAYV
AVTRPRRLLLCSGHWWGEGTKRPRGPSALLREIHDACLDGGPGHLVDEWTPEPTPDAVNP
TTEVVLRAEWPADPLGVRRPALAEAAALVRRFLTGEGGPDNSAASDPQVARWRREADLLL
AERAELSRLSGPIDVVLPEQLSVTQLVSLRRDPAALARTLRRPLPAEPNPYARRGTAFHA
WLEQRFGADRLLDTDELPGAADEDAAPDEALAELQRRFLASEWADRTPIEVEVPFATVIG
GVVVRGRMDAVFRRPGDRFDVVDWKTGARPTGASAEVAAVQLAVYRLAWAELAGVPVDRV
GAAFHYVREGVTVRPADLLDLDGLTTLITSIPQP
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcccgcgctgttcagccccggcgccccggcgccccgggcggccgactccggt
ccgcgctacacccctgtcgagctggcgaagctgctccgactgccggcaccgacccgggag
caggcggcgatcatcgccgcgccggtcgaaccgctgctggtggtcgcgggcgcaggatcg
ggcaagaccgagacgatggccgcccgggtggtatggctggtggccaactcctacgtgcgg
ccggagcaggtgctcggcctcaccttcacccgcaaggccgccggtgagctggggcaccgg
gtgcgtacccggctcgaccagttgatccgtcgcctcggtcggcgtggccgggacccgctc
gacgacccgttggccggggaaccgacggtggccacctaccactcgtacgccggtcggatc
gtcaccgagcacggcctgcgggccggctacgagccgtccacccggctgctcaccgaggcg
tcccggtggcagttggtggatctcatcgtgcgcaactacgacggcgacatgtccgaggtg
gaccggatgcccagcacggtcaccgacgcggtgctggccctcgccggtgagctggacgaa
catctggtcgagccggacgacctggccgcgtggaccggccgcttcttcgccgacgtgcag
tcgcgtcccggccggatctacgccgacgtgcgcaaggccctcgccttgcagcagacccgg
ctgaagcttctgccgctggtccgcgcctacgcccggcgcaaggacgacttcgaggcgatg
gacttcgccgaccagttggcccgcgccgcccgggtggcccgcgaccatccgggcgtcggc
gagatcgaacgggatcgctaccgcgtggtgctgctcgacgagtaccaggacaccagccac
gcccaggtggtgctgctgcgggcgctgttcggcgacgggcatccggtgaccgccgtgggc
gacccctgccagtccatctacggctggcggggtgccagcgccggcaccctggaccgcttc
ccgaccgagttcgtcggcagcgacggcagcccggcccgggtgctcgggctgaccaccagt
tggcgcaaccgtccggagatcctcgcggtggccaacgcgctggccaccccgttgcgggcg
gccggtgcccgggtgccggaactgcacgccgcgctcagcgtcgacgagcccatcgcgcac
cgcagcccccgtggggccgccgccggcaccgtgcactgtgcgctgctgtcgacgtacgcc
gacgaggccgactggatcgccgacagcctgctggcggcgtggcagggggcggctcggatg
ccgcgggcgctgcccgagcagattccggtcaccgcccgcccgaccacggcggtgctggtc
cggctgcgcagccagatcccggcgatcgccgccgcgctgcgcgagcgcggcctaccggtc
gaggtggtcgggctcggcggcctgctggacacccccgaggtccgcgacgtggtgtgcacg
ctgcgggtgctggccgacccgaccgacggtgccgccctgctgcgcctgttgaccggtgcc
cggtggcggatcgggccccgggatctggtcgccctgcaccgccgggccaaggccatcgcc
gccgcccgccgccaactcgccgacgacggcgatcccgagatcgtcccggatcgtctggac
gaggcgaccctggtggaggcgctggccgacctcggcccggcgcaggcgtactcggccgag
gggtatgcgcggctgcgcgcgtacgcccgggaactggggttgctccgttaccggctggac
cagtccctgccggagctgattgcggacatcgagcggaccaccggcctggacgtggaggtg
gcggtacgggccggcggggagggcgccggtgacgccggcctggcccgcgcccacctggac
gccctcggtgacgtggccgcccggttcagcggggagacgccgggggccaccctcgccggt
ttcctggcctatctggccgccgccgaggacgaggagcgcgggctcgcccccggtgaggtg
gaggtggtcgagggtgcggtgcagatcctcaccgcgcacgccgcgaaagggctggaatgg
gacgtcgtggcggtcgccgggctgagcaggggagtgtggccggggccggtacgcaactcc
gatcactggctcggtggcctgggcgtcctgccgttcccgttgcgtggtgacgccgacggg
ctacccgagctggccctggccgaggccgccgatcaacgcgcggtggcccgcacgatggcg
gagttcaccgacgcctggcgggcccacgacgagcgggaggaacggcgactggcgtacgtg
gcggtgacccgcccccgtcgactgctgctctgctcgggccactggtggggggagggcacc
aaacgcccacgcgggccgtcggcgctgttgcgtgagatacacgacgcctgcctggacggc
gggcccggtcacctggtcgacgagtggacgcccgagccgacgcccgacgcggtcaacccg
accaccgaggtggtgttgcgcgccgagtggccggcggacccgctgggggtacgtcggccg
gcgctggccgaggcggcggcgctggtgcgccggttcctcaccggggagggcgggccggac
aactccgccgcctcggatccgcaggtggcgcggtggcggcgggaggccgatctgctgctg
gccgagcgggcggagctgagccgactctccggcccgatcgacgtggtgttgccggagcag
ctgtcggtgacgcagctggtcagtctgcgccgggatccggcggccctggcccgtacgctg
cgccggccgttgcccgccgagcccaacccgtacgcccgtcggggcaccgccttccacgcc
tggctggagcagcgcttcggggcggaccggctgctcgacaccgacgagttgcccggggcg
gccgacgaggacgccgcaccggacgaggcgttggccgagctgcagcggcgcttcctggcc
agcgagtgggccgaccggacgccgatagaggtggaggtgccgttcgccacggtgatcggc
ggcgtggtggtgcggggccggatggatgcggtgttccgccggccgggggaccgcttcgac
gtggtcgactggaagaccggtgcccgcccgaccggcgcgtccgcggaggtggccgcggtg
cagctggcggtctaccggctggcctgggcggagttggccggggtcccggtcgaccgggtc
ggcgcggccttccactacgtgcgggagggggtcacggtacgcccggcggatctgctcgac
ctcgatggcctcaccacgttgatcacctcgattccacagccgtga
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