Micromonospora maris: VAB18032_01200
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Entry
VAB18032_01200 CDS
T01471
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vma
Micromonospora maris
Pathway
vma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VAB18032_01200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vma03021
]
VAB18032_01200
03400 DNA repair and recombination proteins [BR:
vma03400
]
VAB18032_01200
Enzymes [BR:
vma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VAB18032_01200
Transcription machinery [BR:
vma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VAB18032_01200
DNA repair and recombination proteins [BR:
vma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VAB18032_01200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEB47324
LinkDB
All DBs
Position
complement(5939205..5943092)
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAESRHRDLSTIENEILAEKRQSENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEAESLRETIRTGKGQRKIRALKRLKVVA
AFQNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTTGERGEGR
AFSSDAEARMAYDNGELHLQAPVKIRLQGVVEVDNGAGAQPWTAPEGWTQGEPLTVETTL
GRVLFNETLPQGYRYVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKREILEKYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQIGQQLDGR
LVVHEHAETSVHARTLADDIKGPDGTVVAERGSDINSILVDKIVAAGVETVRVRSVLTCE
SKLGVCGACYGRSLPTGKIVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARIPKGKAPIADTPGRIRIEDGERSRKIVVIPDDGSDEIVYDKISKRVRLRA
HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgagttgcgaattgggctggcgaccgcggacgacatc
cgtcagtggtcgcacggcgaggtcaagaagcccgagacgatcaactaccgtaccctcaag
ccggagaaggacggtctcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctcgaaggtccgccgggagcggatgggccacatcgagctggccgccccg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggctacctgctggacctc
gccccgaaggacctcgaaaagatcatttacttcgcctcgtacgtcgtgacgagcgtggac
gccgagtcgcgtcaccgtgacctctcgaccatcgagaacgagatcctggccgagaagcgg
cagtcggagaacagccgcgactcggagatcgagaagcgggccgccaagctcgaggccgac
ctggccgagctggaggccgagggcgcgaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgcctggac
gaggtgctggacaccttccgcaagctggagccgaagcagctggtcaccgacgagctgctc
taccgcgagctgcgcgaccggttcggcgagtacttcaccggtggcatgggcgccgaggcg
atcaaggccctggtgcagaacatggacctcgacgccgaggcggagagcctgcgcgagacc
atccgtaccggcaagggccagcggaagatccgggcgctcaagcggctgaaggtcgtggcg
gcgttccagaacacccgcaactcgccgctcggcatggtgctggactgcgtaccggtgatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccggttcgcgaccagcgacctg
aacgacctctaccgccgggtgatcaaccggaacaaccggctcaagcggctgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgtcggggccggccggtcaccggtccgggtaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgaacggcagcgg
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggtgctgctcaaccgg
gcgccgaccctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtgcacgtgccgctgtccgccgaggcccaggccgaggcgcggatcctgatgctg
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcggcctgtaccacctgacccacctcaccaccggtgagcgtggcgagggtcgg
gcgttcagctcggacgccgaggcgcggatggcgtacgacaacggcgagctgcacctgcag
gcgccggtcaagatccggctgcagggtgtggtcgaggtcgacaacggtgccggcgcgcag
ccgtggaccgcgcccgagggctggacccagggtgagccgctgaccgtggagaccacgctc
ggccgggtgctgttcaacgagaccctgccgcagggctaccggtacgtgaactacgagatc
cgcaagggtcagctctccgcgatcgtcaacgacctcgccgagcggttcccgaaggtggcc
ctggcggccaccctcgacgggctcaaggaggccggtttccactgggccacctggtccggc
gtgaccatcggcatggaggacgtcatcgctccgccgcgcaagcgggagatcctggagaag
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gagcgtcgcggcgaactcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggacaccgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgctcgc
ggtaacctgctccagctccggcagatcgcggcgatccgtggtctggtggccaacccgaag
ggtgagatcatcccgcggccgatcaaggccagctaccgggaaggtctgtccgtgctggag
tacttcatctccacgcacggtgcccgtaagggtctcgcggacaccgccctgcgtaccgcc
gactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtcatcatccgcgag
gaggactgcggcaccgaccgggccatcccgatgcagatcggtcagcagctcgacggccgg
ctcgtggtgcacgagcacgcggagaccagcgtgcacgcccgtaccctggccgacgacatc
aaggggccggacggcaccgtcgtcgccgagcggggctcggacatcaactcgatcctggtc
gacaagatcgtcgccgccggggtggagaccgtccgggtgcgcagcgtgctcacctgcgag
tcgaagctgggcgtctgcggtgcgtgctacggccgttcgctgccgaccggcaagatcgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggtacgcag
ctgacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccccgtgtccaggagatcttcgaggcccggatcccgaagggcaaggctccgatcgccgac
accccgggccggatccggatcgaggacggcgagcggtcgcgcaagatcgtcgtcatcccg
gacgacggcagcgacgagatcgtgtacgacaagatctcgaagcgggtccggctgcgggcg
cacgacggcgaccacgtcgaggtcggcgagaagctcaccgagggcaccatcgacccgcac
gaactgctgcgcatcctcggcccgcgggcggtccaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccgggtgtg
ctcgtcgaccgggcgctgttcgagtcggagaaccgccgactcgtcggcgagggtggcgag
cccgcggcaggccgtccggtgctgatgggtatcaccaaggcctcgctggccaccgactcc
tggctctcggcggcctccttccaggagaccacccgggtgctgaccgacgcggcgatccac
gcccgcagcgactcgctgatcggtctcaaggagaacgtgatcatcggtaagctcatcccg
gccggtaccggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgaccggctacccggagaccgactacggcttcgggccggccagc
ggccaggcggttccgcttgacgacttcgacttcgggtcgtaccgctga
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