Micromonospora maris: VAB18032_01205
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Entry
VAB18032_01205 CDS
T01471
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vma
Micromonospora maris
Pathway
vma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VAB18032_01205 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vma03021
]
VAB18032_01205 (rpoB)
03400 DNA repair and recombination proteins [BR:
vma03400
]
VAB18032_01205 (rpoB)
Enzymes [BR:
vma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VAB18032_01205 (rpoB)
Transcription machinery [BR:
vma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VAB18032_01205 (rpoB)
DNA repair and recombination proteins [BR:
vma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VAB18032_01205 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEB47325
LinkDB
All DBs
Position
complement(5943219..5946650)
Genome browser
AA seq
1143 aa
AA seq
DB search
MAASRPAKTSRTSSAFAPRRVSFGRITEHLEVPNLLAIQNESFDWLVGNEAWQGRSADDP
HARSGLAEILDEISPIEDFSGTMSLSFSAPRFDEVKASIEECKEKDLTYCAPLFVTAEFT
NNTTGEIKSQTVFMGDFPMMTPKGTFIINGTERVVVSQLVRSPGVYFDKQPDKTSDRDLS
SVKVIPSRGAWLEFDIDKRDTVGVRIDRKRRQAVTVLLKAIGWSAERIREKFGWSELMMT
TLEKDHIAGQDEALLDIYRKLRPGEPPTRENAQTLLDNLFFNPKRYDVAKVGRYKFNKKL
ELDVPITTGTLTEDDIVATVEYLCRLHAGEEGYEADDIDHFGNRRLRTVGELIQNQVRVG
LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIREFFGTSQLSQFMDQTNPLAGLTHR
RRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFARVNPFGFI
ETPYRKVVDGRVTDQIDYLTADEEDRFVKAQANAPLRADGTFAEDRVLVRRKGGETEDVP
PAAVDYMDVSPRQMTSVATAMIPFLEHDDANRALMGANMQRQAVPLVKAESPLVGTGMEY
RAAVDAGDVVVAEVGGVVEDLCADYITVHQDDGHRRTYLLHKFRRSNAGSCVNQKPVVFE
GDRVEAGQVIADGPCTDEGEMALGRNLLVAFMCWEGHNYEDAIILSQRLVQQDVLTSIHI
EEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVPGDILVGKVTPKGET
ELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVY
VAQKRKIQDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIVLNPLGVPSRMNIGQVL
ETHLGWVAKTGWKVEGDDAEWKRQLQSIGADSSEPDTNVATPVFDGAREEEISGLLASTL
PNRDGKQLIGATGKAQLFDGRSGEPLPDPIAVGYIYILKLNHLVDDKIHARSTGPYSMIT
QQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIP
EPGIPESFKVLLKELQSLCLNVEVLSSDGVALEMRETDDEVFRAAEELGIDLSRREPSSV
EEV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagtcgtacgtcgagcgcattcgctccccgccga
gtttccttcggccggatcaccgaacacctcgaggtccccaacctcctcgccattcagaac
gagtccttcgactggctcgtcggcaacgaggcttggcagggccggtcggcggacgacccg
cacgcacgctcgggtctcgcggaaatcctcgacgagatcagtcccattgaggacttttcc
ggcaccatgtcgctttccttctcggctccgcgcttcgacgaggtcaaggcctcgatcgag
gagtgcaaggagaaggacctcacctactgcgcgccactgttcgtgaccgcggagttcacc
aacaacaccaccggcgagatcaagagccagacggtgttcatgggtgacttcccgatgatg
acgccgaagggcaccttcatcatcaacggcaccgagcgtgtggtggtcagccagctcgtc
cggtcgccgggcgtctacttcgacaagcagccggacaagacctccgaccgcgacctctcc
agcgtgaaggtcatcccgagtcggggtgcctggctggagttcgacatcgacaagcgcgac
acggtcggtgtccgcatcgaccgcaagcgtcggcaggccgtcacggtgctgctgaaggcc
atcgggtggtccgccgagcggatccgtgagaagttcggctggtccgagctgatgatgacc
acgctcgagaaggaccacatcgccggccaggacgaggcgctactcgacatctaccggaag
ctgcgccctggcgagccgccgacccgcgagaacgcccagaccctgctcgacaacctcttc
ttcaacccgaagcggtacgacgtcgccaaggtcggtcggtacaagttcaacaagaagctc
gagctggacgtgccgatcaccaccggcacgcttaccgaggacgacatcgtcgccaccgtg
gagtacctctgccggctgcacgccggtgaggagggctacgaggccgacgacatcgaccac
ttcggcaaccggcggctgcgtaccgtgggcgagctgatccagaaccaggttcgggtcggc
ctgtcccggatggagcgggtcgtccgcgagcggatgacgactcaggacgtcgaggcgatc
acgccgcagaccctgatcaacatccgcccggtggtggccgcgatccgggagttcttcggt
acctcgcagctgtcccagttcatggaccagaccaacccgctggcgggcctgacccaccgg
cgccggctgagcgcgctcggcccgggtggtctgtcccgggagcgggccggcttcgaggtc
cgcgacgtgcacccgtcccactacggccggatgtgcccgatcgagacgccggaaggcccg
aacatcggcctgatcggcgccctgtccaccttcgcccgggtcaacccgttcggcttcatc
gagacgccgtaccggaaggtcgtcgacggtcgggtcaccgaccagatcgactacctgacc
gcggacgaggaggaccggttcgtcaaggcgcaggccaacgcgccgctgcgggccgacggc
acgttcgccgaggaccgcgtcctggtccgccgtaagggcggcgagaccgaggacgtcccg
ccggcggccgtggactacatggacgtgtcgccgcggcagatgacctcggtcgccaccgcg
atgatcccgttcctcgagcacgacgacgccaaccgtgccctgatgggcgcgaacatgcag
cgccaggcggtgccgctggtcaaggccgagtccccgctcgtcggcaccggcatggagtac
cgtgccgccgtcgacgccggtgacgtggtcgtggccgaggtcggtggcgtggtcgaggac
ctctgcgccgactacatcaccgtccaccaggacgacggccaccgccggacgtacctgctg
cacaagttccgccgctccaacgccggctcctgcgtcaaccagaagccggtggtcttcgag
ggcgaccgggtcgaggccggccaggtcatcgccgacggtccgtgcaccgacgaaggcgag
atggcgctcgggcgcaacctgctcgtggcgttcatgtgctgggagggccacaactacgag
gacgcgatcatcctgtcgcagcgcctcgtgcagcaggacgtgctcacctcgatccacatc
gaggagcacgaggtcgacgcccgggacaccaagctcggcccggaggagatcacccgcgac
atcccgaacgtcagcgaggagatgctcgccgacctcgacgagcgcgggatcatccggatc
ggtgccgaggtcgtccccggcgacatcctggtcggcaaggtcaccccgaagggtgagacc
gagctgaccccggaggagcggctgctccgcgcgatcttcggtgagaaggcgcgtgaggtc
cgggacacctcgctgaaggttccgcacggcgagaccggcacggtcatcggtgtgcgtacc
ttctcccgcgaggacggcgacgagctgccgccgggcgtcaacgagctggtccgggtctac
gtcgcccagaagcggaagatccaggacggtgacaagctcgccggccgccacggcaacaag
ggcgtcatctccaagatcctgccggtcgaggacatgccgttcctggaggacggcaccccg
gtcgacatcgtgctcaacccgctgggtgtgccgagccgaatgaacatcggccaggtgctg
gagacccacctgggctgggtggccaagaccggttggaaggtcgagggcgacgacgccgag
tggaagcgccagctgcagagcatcggcgcggactcctcggagccggacaccaacgtggcc
actccggtcttcgacggtgcccgcgaggaggagatctccggtctgctcgcgtcgaccctg
cccaaccgggacggcaagcagctgatcggtgccaccggaaaggcgcagctgttcgacggc
cgctccggcgagccgttgcccgacccgatcgccgtcggttacatctacatcctgaagctc
aaccacctggtcgacgacaagatccacgctcggtcgaccggcccgtactcgatgatcacg
cagcagccgctgggtggtaaggcgcagttcggtggccagcgtttcggtgagatggagtgc
tgggccatgcaggcgtacggagccgcgtacgccctgcaggagctgctgacgatcaagtcc
gacgacgtcctcggccgggtgaaggtctacgaggccatcgtcaagggcgagaacatcccc
gagccgggcattccggagtcgttcaaggtgctgctcaaggagctgcagtcgctgtgcctc
aacgttgaggtgctctccagcgacggcgtggccctggagatgcgcgagaccgacgacgag
gtgttccgggctgcggaggaactgggcatcgacctttcccggcgtgagccgagctcggtc
gaggaagtgtga
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