Micromonospora maris: VAB18032_09150
Help
Entry
VAB18032_09150 CDS
T01471
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vma
Micromonospora maris
Pathway
vma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VAB18032_09150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vma03400
]
VAB18032_09150
Enzymes [BR:
vma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAB18032_09150
DNA repair and recombination proteins [BR:
vma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VAB18032_09150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEB42948
LinkDB
All DBs
Position
981077..984775
Genome browser
AA seq
1232 aa
AA seq
DB search
MTALTGLFAAALADPGLARVRDLARSGAAQVDGLDLTAPPALRPFAVAAVAADPTTRTDK
QGGDKQGGGKQGGGAGRPVLAVTATSREAEDLVAALGSLLPAEQVAIFPSWETLPHERLS
PRSDTVGRRLAVLRRLAHPDATDAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVRLSAG
DEADLEQVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIR
TFAVADQRTIEQVPQLWAPPCRELLLTPAVRERAAALAQQHPELAEILDKLAGGVPVEGM
ESLAPALIGADSMELLLDCMPAGTHVLLCDPERIRTRAHDLVRTSDEFLAASWAAAAVGG
QAPIDLGAAAFRTLADVRAHAATLRQPWWTLSPFGLAEPGVAAARQPWEDEPDTVDITPD
DAIAVTLAAQPAPLYHGETARVVDDLKRWAGEGLSIALVFEGHGPAQRAVEVLRDGGLGA
RLTEQVPAAPAAGELLVTCGSLTGGFVDEAARFVLLTGNDVTGGRGASTRDMRKMPSRRR
NTIDPLELRAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPT
DQLDQLSRYVGGEQPTLHKMGGSDWQKSKARARKAVKEIAAQLIQLYAARKASKGHNFGP
DTPWQRELEDAFPWQETPDQLAAIDEVKRDMEQSVPMDRLICGDVGYGKTEIAVRAAFKA
VQDGKQVAVLVPTTLLVQQHYNTFAERMSQFPVTIRQLSRFQTPKEAEQTLEMVANGSAD
IVIGTHRLLAASTRFKSLGLVIVDEEQRFGVEHKEHLKSMRAAVDVLSMSATPIPRTLEM
AITGIREMSTIATPPEERHPVLTAVGAYDDRQVAAAIHRELLRDGQVFYLHNRVESIERT
ARKLRELVPEARVAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIV
ERADLLGLAQLHQIRGRVGRGRERAYAYFLYPPDKPLTEHAHERLATIAQHTELGAGMYV
AMKDLEIRGAGNLLGGEQSGHIEGVGFDLYVRMVGEAVSAFKGEQPEEETDVKIDLPVDA
HLPHDYVGVERLRLEMYRKLAEARDEERLREVAVEMTDRYGEPPAPVQNLIAVARFRLLA
RRYGLTDVSVQGKHLRFSPLPLPDSKQMRLKRYHPDSVYKTALDQVSVPRPTTRRIGGEP
LRDQALLDWCAQLLSDVLGAPTAAQPATAGAR
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgctcaccggactgttcgccgccgcccttgccgacccgggtctggcgcgggtc
cgtgacctggcgcgctccggtgcggcccaggtcgacgggctcgacctgaccgccccgccg
gccctgcgcccgttcgcggtagccgccgtcgcggccgaccccaccaccagaaccgacaag
cagggcggcgacaagcagggcggtggcaagcagggcggcggtgcggggcggccggtgctg
gcggtgacggcgaccagtcgcgaggccgaggatctggtcgccgcgttgggctcgctgctg
ccggccgagcaggtggcgatcttcccgagctgggagacgctgccgcacgagcggctctcg
ccgcgctcggacaccgtgggccggcggctggcggtgctgcgccggctcgcgcatccggac
gccaccgacgcgcacgggcgcaccgggccgttgcgggtggtcgtagcgccggtgcggtcg
ctgctgcaaccgcagctcaaggggctcggtgacctggagccggtgcggctgtccgccggg
gacgaggccgacctggagcaggtcgcccgccggttgaccgacatggcgtacgcgcgggtc
gacctggtcaccaagcggggcgagttcgccgtgcgcggcggcatcctggacgtcttcccg
cccaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggagatccgc
accttcgccgtcgccgaccaacgcaccatcgagcaggttcctcagctctgggcaccgccc
tgccgggaactgctgctcaccccggcggtccgcgagcgggccgccgcgctggcgcagcag
cacccggagctggccgagatcctggacaagctggcgggcggcgtaccggtggaggggatg
gagtccctggccccggcgctgatcggcgcggactcgatggagttgctgctggactgcatg
cccgccggcacccacgtcctgctctgcgatccggagcggatccgcacccgcgcgcacgac
ctggtgcgtacctcggacgagttcctggcggccagctgggctgcggccgcagtcggcggc
caggccccgatcgacctcggcgccgccgccttccggaccctggccgacgtacgcgcacac
gccgcgaccctgcgccagccctggtggacgctgtccccgttcgggctggccgagccgggt
gtcgcggctgcccggcaaccgtgggaggacgaaccggacacggtcgacatcacccccgac
gacgcgatcgcggtgacgcttgccgcccagccggcaccgctctaccacggtgagaccgcc
cgggtggtcgacgacctgaagcggtgggccggcgaaggcttgtcgatcgcgctggtcttc
gaggggcacggtcccgcccagcgggccgtggaggtgctgcgcgacggcggcctgggtgcc
cggctgaccgagcaggtgccggcggcccccgccgccggcgagctgctggtcacctgcggc
agcctgaccggtggcttcgtcgacgaggcggcccggttcgtgctgctcaccggcaacgac
gtcaccggtggtcggggcgcatcgacccgggacatgcgcaagatgccgagccggcggcgc
aacaccatcgacccgctggaactgcgcgcgggtgaccacgtggtgcacgagcagcacggc
atcggccggtacgtggaactggtgcagcgcacggtcaacggcgcgtcccgcgaatacctg
gtcatcgagtacgccccgagcaagcgcggccagccgggcgaccgcctcttcgtccccacc
gaccagctcgaccagctcagccggtacgtcggcggcgagcagcccaccctgcacaagatg
ggtggctcggactggcagaagtccaaggcccgggcccgcaaggcggtcaaggagatcgcc
gcccagctgatccagctctacgccgctcgtaaggcgtccaagggccacaacttcgggccg
gacacgccgtggcagcgggagttggaggacgccttcccctggcaggagacacccgaccag
ctcgccgccatcgacgaggtcaagcgggacatggagcagagcgtcccgatggaccggctg
atctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcg
gtgcaggacggcaagcaggtggcagtgctggtgccgaccaccctgctggtgcagcagcac
tacaacaccttcgccgagcggatgagccagttcccggtgaccatccggcagctgtcccgg
ttccagacgccgaaggaggccgagcagacgctggagatggtggccaacggcagcgccgac
atcgtcatcggcacccaccggctgctggcggcgtccacccgattcaagtcgttggggctg
gtcatcgtcgacgaggagcagcgcttcggggtcgaacacaaggaacacctcaagtcgatg
cgggccgcggtcgacgtgttgagcatgtcggccaccccgatcccgcgaaccctggagatg
gcgatcaccggcatccgggagatgtcgacaatcgccactccgccggaggagcggcatccg
gtgctcaccgctgtcggggcgtacgacgaccggcaggtggccgccgcgatccaccgtgag
ctgctccgcgacggccaggtcttctacctgcacaaccgggtcgagtcgatcgagcggacc
gcccgcaagctgcgggaactggtgcccgaggcccgggtcgcggtggcccacggccagatg
ggcgaggaagccctggagaaggtcatggtcggcttctgggagaaggagttcgacgtcctg
gtctgcaccacgatcgtcgagtccggcatcgacatcccgaacgccaacaccctgatcgtg
gagcgggccgacctgctcggcctggcccagctgcaccagatccggggccgggtgggccgg
ggtcgggagcgggcgtacgcgtacttcctctacccgccggacaagccgctcaccgagcac
gcgcacgagcggctggccaccatcgcccagcacaccgagctgggcgccggcatgtacgtg
gcgatgaaggacctggagatccggggcgccggcaacctgctcggcggtgagcagtccggg
cacatcgagggcgtcggcttcgacctgtacgtccggatggtcggcgaggcggtgtcggcg
ttcaagggcgagcagcccgaggaggagaccgacgtcaagatcgacctgccggtggacgcc
cacctgccgcacgactacgtgggtgtggaacggctccgcctggagatgtaccgcaaactc
gccgaggcgcgcgacgaggagcggctgcgcgaggtggccgtcgagatgaccgaccggtac
ggcgaaccgcccgccccggtgcagaacctgatcgcggtggcgcggttccggctgctggcc
cgccgttacggcctgaccgacgtcagcgtgcagggcaaacacctgcgcttcagcccgctg
ccgctgcccgactcgaagcagatgcggctcaagcgttaccaccccgactcggtctacaag
accgcgttggaccaggtgagcgtcccgcgtccgacgacccgccggatcggcggcgagccg
ctgcgcgaccaggccctgctggactggtgtgcccagttgctctccgacgtcctcggtgcc
cccaccgccgcccagcccgccaccgccggagcccgctga
DBGET
integrated database retrieval system
