Micromonospora maris: VAB18032_12010
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Entry
VAB18032_12010 CDS
T01471
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vma
Micromonospora maris
Pathway
vma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAB18032_12010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vma03019
]
VAB18032_12010
03016 Transfer RNA biogenesis [BR:
vma03016
]
VAB18032_12010
Enzymes [BR:
vma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VAB18032_12010
Messenger RNA biogenesis [BR:
vma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VAB18032_12010
Transfer RNA biogenesis [BR:
vma03016
]
Prokaryotic type
tRNA degradation factors
VAB18032_12010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
KH_1
S1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_1st
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
AEB43516
LinkDB
All DBs
Position
1615925..1618294
Genome browser
AA seq
789 aa
AA seq
DB search
MTETKLGTESRTAVIDNGSFGTREITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPK
EQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEV
QVVETILALDPQHPYDVVAINAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELS
RATFDMVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRE
LCRAQSELAEVAAKPVAEFPVFLDYSDDAYDAVAQFARADVAEALQIAGKADREEALDAI
KSRLVEELGPRFEGREKELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLNAEVGVL
PRVHGSALFERGETQILGVTTLNMLRMEQALDTLSPEKSKRYMHNYNFPPYSTGETGRVG
SPKRREIGHGALAERALIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAG
VPLKAPVAGIAMGLISDEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTK
LDGIPSDVLAAALQQAHEARQTILDVMQRAIEAPAEMSDYAPRVTTVKIPVDKIGMVIGP
KGQTINAIQDETGAEISIEDDGTIYVGATNGPSAQAAVERINAIANPTMPKAGDRFLGTV
VKTAPFGAFISLLPGRDGLLHISKVGDGKRVEKVEDFLNVGDRVEVEIADIDQRGKIYLD
KVRPEGAEAPAPAEAEGERPASRGDRGDRGPRDRGDRERGGDRGGRGPERGEGGEGGGDS
RPRRRTRHS
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaccaaactcggcaccgaatcccgcaccgccgtgatcgacaacgggtccttc
ggcacccgcgagatcacgttctccaccggtcggctggcccgacaggccgccggctccgtc
atcgcccagctgggcgagacggtcgtcctctccgccaccaccgccggcaagcagccgaag
gagcagttcgacttcttcccgctgaccgtcgacgtcgaggagcggatgtacgccgcgggt
cgcatccccggctcgttcttccgtcgcgagggtcgtcccagcgaggacgccatcctcacc
tgccgcctgatcgaccggccgctgcgcccgtcgttcgtcaagggcctgcgcaacgaggtc
caggtggtcgagacgatcctcgcgctcgacccgcagcacccgtacgacgtggtggcgatc
aacgccgcctcgatgtcgaccaagctgtccggcctgccgttctccggcccgatcggggcg
acccggatggcgcacgtcgacggccagtgggtcgccttcccgacccacgaggagctgagc
cgggccaccttcgacatggtggtggccggtcgggccctggccgacggcgacgtcgcgatc
atgatggtcgaggccgaggccaccgagcacaccgtcaagctggtcgccgacggtgccccg
gcccccaccgaggaggtcgtggccagcggactggaggccgccaagccggccatccgtgag
ctgtgccgggcgcagagcgagctggccgaggtggccgccaagccggtcgccgagttcccg
gtgttcctggactactccgacgacgcgtacgacgcggtcgcccagttcgctcgcgccgac
gtcgccgaggccctccagatcgccggcaaggcggaccgcgaggaagccctggacgcgatc
aagtcccgcctggtggaggagctcggcccgcgcttcgagggtcgggagaaggagctgtcg
gctgccttccgctcgctgaccaagtccgaggtgcgcaaccgggtactgcgtgagcaggtc
cgcatcgacgggcgtggcccgcgcgacatccggccgctgaacgccgaggtcggcgtgctg
ccccgggtgcacggctcggcgctgttcgagcgcggcgagacgcagatcctcggcgtcacc
acgctcaacatgctgcgcatggagcaggcgctggacaccctctccccggagaagtccaag
cgctacatgcacaactacaacttcccgccgtactcgaccggtgagaccggccgggtcggc
tcgccgaagcgtcgcgagatcggccacggcgcgctcgcggagcgggcgctgatcccggtg
ctgccctcgcgcgaggagttcccgtacgccatccgccaggtctccgaggcgctcggctcc
aacggctccacctcgatgggctcggtctgcgcctcgacgctgggtctgctcagcgccggt
gtgccgctgaaggccccggtggccggcatcgccatgggcctcatctccgacgaggtcgac
ggcaagacccagtacgtcacgctcaccgacatcctcggtgccgaggacgccttcggtgac
atggacttcaaggtcgccggcacccgggacttcgtcaccgcgttgcagctcgacaccaag
ctcgacggcatcccgtccgacgtgctggccgccgcgctccagcaggcccacgaggcccgg
cagaccatcctcgacgtgatgcagcgggccatcgaggctccggccgagatgtccgactac
gcgccgcgggtcaccacggtgaagatcccggtcgacaagatcggcatggtgatcggcccg
aagggtcagaccatcaacgccatccaggacgagaccggcgccgagatctccatcgaggac
gacggcacgatctacgtcggcgccaccaacggcccgtcggcgcaggcggcggtcgagcgg
atcaacgcgatcgccaacccgaccatgccgaaggccggtgaccggttcctcggcacggtg
gtcaagaccgcaccgttcggcgcgttcatctcgctgctgccgggtcgtgacggcctgctg
cacatctccaaggtgggcgacggcaagcgggtcgagaaggtcgaggacttcctcaacgtc
ggcgaccgggtcgaggtcgagatcgccgacatcgaccagcgcggcaagatctacctggac
aaggtccgtcccgagggcgccgaggcaccggctcccgccgaggcggagggtgagcggccg
gccagccgtggtgaccggggtgaccgtggtccgcgtgaccggggtgaccgggagcgcggc
ggcgaccgtggcggccgcggcccggagcggggcgagggcggcgaaggtggcggcgattcc
cggccgcgccggcgcacccggcacagctga
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