Micromonospora maris: VAB18032_14060
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Entry
VAB18032_14060 CDS
T01471
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vma
Micromonospora maris
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vma03019
]
VAB18032_14060
Enzymes [BR:
vma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VAB18032_14060
Messenger RNA biogenesis [BR:
vma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VAB18032_14060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
SLFN-g3_helicase
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEB43924
LinkDB
All DBs
Position
complement(2072326..2076384)
Genome browser
AA seq
1352 aa
AA seq
DB search
MQNPVSPAATDPIRALQRRLPPLMFRDQRQLRRRLDGVRRLRDPQRRESALAEIAAEVAV
AEGRLERRRAALPKITYPPALPVSERKDDIAEAIRDHQVVIVAGETGSGKTTQLPKICLE
LGRGISGLIGHTQPRRLAARTVADRIAEELGTELGDVVGYKVRFTDQVSEQSLVKLMTDG
ILLAELQNDRMLRQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIETDR
FARHFAGPPTEEHPEGVPAPVVEVSGRTYPVEVRYRPLVEVADTDEEEADEENVRDQIQA
IGDAVEELAAEGPGDILVFLSGEREIRDTADALGKLVQNKRSLLGTEILPLYARLSVAEQ
HRVFAPHSGRRVVLATNVAETSLTVPGIKYVVDPGTARISRYSQRLKVQRLPIEPVSQAS
ANQRKGRCGRTSDGICIRLYDEQDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIAAFP
FIDPPDRRNIADGVNLLHELGALDPTETDLDRRLTALGRRLAQLPVDPRLARMVLEGERN
GCATEVMVIAAALSIQDPRERPADKQAQADQAHARFADKESDFVAFLNLWRYLREQQKDL
SSSAFRRMCKAEYLNYLRVREWQDIVSQLRQVLRTADSEGRGRGRRGADDDAPRGGGRRQ
SGADLPEEIDTPKVHQSLLPGLLSHVGLKDAQKNEYLGARGAKFGLFPGSALFRKPPRWV
MAAELVETSRLWGRVNGRIEPEWVEPLAQHLVKRSYSEPHWEKKQAAVMAYEKVTLYGVP
LVTSRKVNFGRIDPVLSRELFIRHALVEGDWSTHHQFWRDNERLRTELEELESRARRRDI
LVDDETIFQFYDERIPADVVSGRHFDTWWKKTRRERPDLLTFTRELLVNAGRGGVDEADF
PDRWHTEGVELPLTYTFEPGSPADGVTVDIPLPLLNQVPAESFDWQVPGLREELVIALIR
SLPKPVRRNFVPVPDFARAALAAITPGEEPLLDALTRQLRRMTGVTVPREAWDLGKLPAH
LRVTFRVRGDDDKPVAEGKDLPALQRQLKAEVRQVVAAAAPDVARTGLTGWEIGTLPRTI
EQIRAGYAVTAYPALVDEGATVGVRVFDSPGEQEAAHWAGTRRLLRLTVPSPAKFLQGRL
SNEAKLALSRNPHGGVQALIEDATGAAIDKLIGDAGGPVWDAEGFTALRDKVRADLVDTV
VEVMERVRAVLAAAYAVQQRLGATRNLAVVAALADIRNQLTGLVHAGFITEVGYARLSDL
LRYLTAIERRLDRLPGNPPRDKQLQDRIAVVQREYDEMLAVLPPARRDSVAVRQIRWMIE
ELRVSVFAQALGTPYPISEQRIYRAMDDAEGR
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatccagtctcacctgccgcgaccgatccgatccgcgcgttgcagcgtcgcctt
cccccgttgatgttccgtgaccagcgtcagctgcgccggcggctggacggggtacgcagg
ctgcgcgacccgcagcggcgggagtcggcgctggccgagatcgcggccgaggtggccgtg
gcggagggccggttggaacgacgccgggccgcgctgccgaagatcacctatccgccggcg
ttgccggtcagcgagcgtaaggacgatattgccgaggcgatccgcgatcaccaggtggtg
atcgtggccggtgagaccgggtcggggaagaccacccagcttccgaagatctgcctggag
ttggggcgtgggatcagcgggctgatcgggcacacgcagcctcgtcggctggctgcgcgt
acggtggctgatcggatcgccgaggagttgggcaccgagctgggtgacgtggtcggttac
aaggtgcgcttcaccgaccaggtcagtgagcagagcctggtcaagttgatgaccgacggc
attctgctggccgagttgcagaacgaccggatgctgcgccagtacgacacgctgatcatc
gacgaggcgcacgagcgcagtctcaacatcgattttattctgggctatctcaagcagctg
cttccccgtcgacccgacctcaaggtgatcatcacctcggcgacgatcgagaccgaccgg
ttcgcccggcacttcgcggggccgccgaccgaggagcatcccgagggcgtaccggcgccg
gtggtcgaggtgtccgggaggacgtacccggtcgaggtgcgctaccggccgctggtcgag
gtggcggacaccgacgaggaggaggcggacgaggagaacgtccgcgatcagatccaggcc
atcggtgacgcggtcgaggaactggccgctgaggggcccggtgacatcctggtcttcctc
agcggggagcgggagatccgggacaccgcggacgcgctgggcaagctggtgcagaacaag
cggtcgctgctcggcaccgagatcctgccgctgtacgcccggctgagcgtcgccgagcag
caccgggtcttcgccccgcacagcggacggcgggtggtgctggcgacgaatgtcgcggag
acctcgctgaccgtgcccggcatcaagtacgtggtggacccgggtaccgcccggatctcc
cgctattcgcagcggctgaaggtgcagcggctgcccattgagccggtctcgcaggccagc
gccaaccagcgtaagggccgctgtgggcgtacctcggacggtatctgcatccggctctac
gacgagcaggacttcctgtcgcggcccgagttcaccgacccggagatcctgcggaccaac
ctggcctcggtcatcctgcagatgaccgccatcggtctgggcgacatcgccgccttcccg
ttcatcgacccgccggatcgacgcaacatcgccgacggggtcaacctgctgcacgagttg
ggtgccctggacccgaccgagaccgacctggatcggcgactcaccgcgctcgggcggcgg
ctggctcaactgccggtcgacccccggctcgcgcggatggtgctcgaaggggagcgcaac
ggctgcgccaccgaggtgatggtgatcgccgcggcgttgtcgatccaggatccgcgtgag
cggccggccgacaagcaggcacaggccgaccaggcgcacgcccggttcgccgacaaagag
tcggacttcgtggcgtttctgaacctgtggcggtatctgcgcgagcagcagaaggacctg
tcctccagcgcgttccgccggatgtgcaaggccgagtacctcaactacctgcgggtacgc
gagtggcaggacatcgtcagccagttgcgccaggtgctgcgtaccgccgattcggagggc
cgggggcgcggacggcgaggcgccgacgacgacgccccgcgcggaggcgggcgacgccag
tccggcgcggacctgccggaggagatcgacaccccgaaggtgcaccagtcgctgctgccc
ggcctgctgtcgcacgtcgggctcaaggacgcccagaagaacgagtacctgggggcccgg
ggggcgaagttcgggctgttccccggctcggcgctgttccgcaagccaccgcgctgggtg
atggccgccgagttggtggagacctcccggttgtggggtcgggtgaacgggcggatcgaa
cccgagtgggtcgaaccgctggcccagcacctggtcaaacgcagctacagcgagccgcac
tgggagaagaagcaggcggccgtgatggcgtacgagaaggtgacgctgtacggcgtaccg
cttgtcacttctcgcaaggtcaacttcggtcggatcgatccggtgctgagccgggagttg
ttcatccggcacgcgctggtcgagggcgactggtccacccaccaccagttctggcgggac
aacgagcggctgcgtaccgagttggaggagttggagagccgggcccggcggcgcgacatc
ctggtcgacgacgagacgatcttccagttctacgacgagcggatccccgccgacgtggtc
tccgggcggcacttcgacacctggtggaagaagacccgccgggagcgcccggacctgctc
accttcacccgtgagctgctggtcaacgcgggtcggggcggcgtggacgaggcggacttc
cccgaccggtggcacaccgagggtgtcgagttgccgttgacgtacacgttcgagcccggg
tccccggccgacggggtgaccgtcgacatcccgctgccgctgctcaaccaggtgccggcg
gagagcttcgactggcaggtgccgggtctgcgggaggaactggtcatcgcgttgatccgt
tcgctgcccaagccggtgcggcgcaacttcgtaccggtgccggacttcgcccgcgccgcg
ctggccgcgatcacccccggcgaggagccgctgctggacgcgctgacccggcagctgcgc
cggatgaccggggtgaccgtgccccgcgaggcctgggatctcggcaagttgccggcacac
ctgcgggtcaccttccgggtgcgcggcgacgacgacaagccggtcgccgagggcaaggat
ctgccggccctgcaacgccagctcaaggccgaggtacgccaggtggtggccgccgccgcg
ccggacgtggcgcgtaccgggctgaccggctgggagatcggcaccctgccgcgcaccatc
gagcagatccgggcggggtacgcggtgaccgcgtacccggcgctggtggacgagggcgcc
acggtcggggtacgggtcttcgactcgccgggcgagcaggaggccgcgcactgggcgggt
acccgtcggctgctgcggctgaccgtgccgtcaccggccaagttcctccagggccggctc
tccaacgaggcgaagctggcgttgtcgcgcaatccgcacggcggggtgcaggcgctgatc
gaggacgccaccggcgcggcgatcgacaagctgatcggcgacgccggcgggccggtctgg
gacgccgagggtttcaccgcgctgcgggacaaggttcgcgccgatctggtggacaccgtg
gtggaggtgatggagcgggtccgggcggtgctcgccgccgcgtacgcggtgcagcagcgg
ctcggcgcgacgaggaacctggccgtggtggccgccctggccgacatccgtaaccagctc
accgggctggtgcacgccggtttcatcaccgaggtcggttacgcccggctgtccgatctg
ctgcgctacctgactgccatcgagcggcggctggatcggttgcccggcaatccgccccgg
gacaagcagttgcaggaccggatcgcggtggtccagcgggagtacgacgagatgctcgcc
gtactcccgccggcccgacgtgactccgtcgccgtacggcagatccgctggatgatcgag
gaactgcgggtgagcgtcttcgcccaggccctcggcactccgtacccgatctcggagcaa
cgcatctaccgggccatggacgacgccgaagggcgctga
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