Micromonospora maris: VAB18032_23650
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Entry
VAB18032_23650 CDS
T01471
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vma
Micromonospora maris
Pathway
vma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAB18032_23650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vma03019
]
VAB18032_23650
03009 Ribosome biogenesis [BR:
vma03009
]
VAB18032_23650
Enzymes [BR:
vma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VAB18032_23650
Messenger RNA biogenesis [BR:
vma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAB18032_23650
Ribosome biogenesis [BR:
vma03009
]
Prokaryotic type
rRNA helicases
VAB18032_23650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
AEB45828
LinkDB
All DBs
Position
4252531..4254231
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AA seq
566 aa
AA seq
DB search
MSSTPVLPDPSTEPPAFADLGLRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAA
TGTGKTAAFALPLLQRMPDERPTGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIY
GGQPIGRQLRALDNGVDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDI
EAILEHTPEQRQTVLFSATMPSRIDGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLV
ARAHKPAALGRVLDVESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRV
MGRLRGGTADLLVATDVAARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAIT
LAEPREHRMLKTIERVTGQRITIDKIPTVADLRTRRLELTQAALRESLLEDDLDPFRVIV
ETLSDEFDLMEVALAAVKLAHEATLPGAEEAAEEIPQVAVRAPRETRPGADARGGDRRPA
RPRANGTTQVFIGLGRRAGVRPQDLVGAITGETGIRGRDIGSIEIADRFSLVEVPIAVAD
EVIAGLRGSTIKGRKATVRRDRDDRH
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagttccacgcccgtactgccggacccgtccaccgagccgcccgccttcgcggacctt
ggcctgcgttccgaactgctcgccgcgctctccgcgctcggctacgaggagcccacgccg
atccagcgggaggccatcggtccgctgctggccggtcgggacctgctcgggcaggccgcc
acgggcaccggcaagacggccgcgttcgcgcttccgctgctgcaacgcatgcccgacgag
cgacccaccggcgacccggtcgccctggtgctggtgcccacgcgggagctggccgtacag
gtctccgaggccttccaccgctacggcaaggatctgggtgcccgggtgctgccgatctac
ggcggacagccgatcggccggcagttgcgcgccctggacaacggggtcgacgtggtggtc
gccacgccgggccgggccctggaccacatcgcccgcggcacactgcggctgggcaacctc
gccacggtggtgctggacgaggccgacgagatgctcgacatgggtttcgccgaggacatc
gaggcgatcctggagcacacccccgagcagcggcagacggtgctgttctcggcgaccatg
ccgtcgcgcatcgacgggatggcccgcgcccacctgaccgacccggtccgcattctcatc
gcccgggagcagccggtcgccggcgaggccccccgggtacgccagagcgcgtacctggtg
gcgcgggcgcacaagccggcggcgctgggccgggtgctggacgtcgagtcgccgaccgcg
gcgatcgtgttctgccgcagccgggaagaggtcgaccggctcaccgagacgatgaacggg
cgcggctaccgggccgaggcgctgcacggcgggatgagccaggaacagcgcgaccgggtg
atgggccggctgcgcggtggcaccgccgacctgctggtcgccaccgacgtggcggcccga
gggctggacgtcgagcagctcagccacgtggtcaactacgacgtgccgtcggccccggag
tcgtacgtgcaccgcatcggccgggtcggccgggccgggcgggaaggggtggcgatcacc
ctcgccgagccgcgcgaacaccggatgctcaagaccatcgagcgggtcaccggtcagcgg
atcaccatcgacaagatcccgacggtggccgacctgcgtacccgccggctggagctgacc
caggcggcgctgcgggagagcctgctggaggacgacctcgatccgttccgggtcatcgtc
gagacgctcagcgacgagttcgacctgatggaggtggcgctggccgcggtcaagctggcc
cacgaggcgaccctgcccggcgccgaggaggccgccgaggagatcccgcaggtggcggtc
cgcgccccccgggagacccggcccggtgccgacgcccgcggcggcgaccgccgcccggcc
cggccccgcgccaacggcaccacccaggtcttcatcggtctgggccgccgtgccggggtg
cgcccgcaggacctggtcggcgcgatcaccggggagaccggcatccggggccgcgacatc
ggctcgatcgagatcgccgaccggttctccctggtcgaggtgccgatcgccgtcgccgac
gaggtgatcgccgggttgcgcggcagcaccatcaagggccgcaaggccaccgtccgccgc
gaccgcgacgaccgccactga
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