Vidua macroura (Pin-tailed whydah): 128803709
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Entry
128803709 CDS
T11570
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03013
Nucleocytoplasmic transport
vmc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128803709 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
128803709 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128803709 (THOC1)
03041 Spliceosome [BR:
vmc03041
]
128803709 (THOC1)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128803709 (THOC1)
Spliceosome [BR:
vmc03041
]
Complex C
Other components
EJC/TREX
128803709 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128803709 (THOC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
128803709
NCBI-ProteinID:
XP_053826908
LinkDB
All DBs
Position
1:106555159..106573742
Genome browser
AA seq
664 aa
AA seq
DB search
MSPPLFSLPEARLRFTTSTREALINKSIKPLLNAFNQVPGSENEKKCTLDQAFRVVVEEE
IINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVAT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEHESTLGQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKLSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQ
LLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSHPEFQLGPPDSKPMRPVR
KRPAPEDFLGKGSNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQA
DPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELP
PPSEEIKTGEDDDEEDNDALLKENNESPEVQRDKAMTGEQIESFANRLGEQWKALAPYLE
MKESDIRQIELDSEDVKMRAKQLLVAWQDQEGIHATPENLITALTKAGLGDLAESLTNDT
EGSS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctgcccgaggcgcggctccgcttcacgacatccaccaga
gaggctctgattaacaaaagcatcaagccattgttgaatgcatttaaccaggttcctgga
agtgaaaatgaaaaaaagtgtaccttggatcaagcttttagagttgttgtagaagaagaa
ataataaacaaagctccatgtgagaatctcctggcaattatttctcttgctattaatgga
gtcacagaaggtatttgcactgcatcaactccttttgtgcttttgggggatgttctggat
tgccttcctttggatcagtgtgacaaaattttcacttttgtggagaaaaatgttgctaca
tggaaatcgaacacattttactctgcagggaaaaattacttgctgcgcatgtgcaatgat
ctcctaagaagattatctaagtcacaaaacacagtcttttgtggaagaattcagctgttc
ttggctaggttatttccactttcagaaaagtcagggcttaacctacagagtcagtttaac
ctggaaaatgtcactgttttcaataccaatgaacatgagagcactctgggacagaagcac
accgaggagagggaagaaggaatggacgtggaagaaggtgaaatgggagatgatgaagca
ccaacaagttgttccattccaatagattataacctgtatagaaaattctggtcacttcaa
gattattttagaaatcctgtgcagtgctatgagaagttgtcatggaagacgtttcttaag
tactcagaagaagttttggctgttttcaaaagttacaagttggatgacacccaggcttcc
cgaaaaaagctggaagaattaaaaacaggaggagaacatgtatattttgcaaagttccta
actagtgaaaagctgatggatttacagctgagtgacagtaacttccgtcgtcacatcttg
ttgcagtacctaatactatttcagtatctaaagggacaagtcaaatttaaaagttcaaac
tatgttctaacagatgaacagtctctttggattgaagatactacaaaagcagtctaccag
cttctttcagaaaatcctccagatggggaaagattctcaaaaatggtagagcatatatta
aatactgaagaaaactggaactcgtggaaaaatgagggctgcccaagctttgtgaaagaa
agatctcatccagagtttcagcttggacctcctgattctaagccaatgagacctgtgagg
aagaggccagctccagaggacttcttaggaaaaggatcaaacaaaaaaatccttatgggg
aatgaggaactgacccgcctttggaatttatgtcctgataacatggaggcctgtaaatct
gagagtagggaatatatgccaacactggaggaattttttgaggaagctattgagcaagca
gaccctgaaaacatggttgaaaataagtataaggctgtgaacaattctaactatggctgg
agagcactgagacttctggcacgcagaagtccccacttcttccagccaacaaaccaacag
ttcaagagtttacctgaatatctagaaaacatggtaatcaaattagccaaggagctgcct
cctccttctgaagaaataaaaacaggtgaagatgacgatgaggaagataatgatgcttta
ttaaaggaaaacaatgaaagtccagaggtgcaacgggacaaagccatgacaggcgagcag
atcgagtcctttgcgaacaggctgggggaacagtggaaggccttggccccctacttggag
atgaaggaatctgatatccggcagattgagctggacagcgaggacgtgaagatgagagcg
aagcagctgctggtggcctggcaggatcaggagggcattcacgccacccctgagaacctg
atcacggcgctgaccaaagccgggctcggggacctggccgaaagcctcaccaacgacacc
gaaggcagcagctaa
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