Vidua macroura (Pin-tailed whydah): 128803825
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Entry
128803825 CDS
T11570
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03013
Nucleocytoplasmic transport
vmc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128803825 (UPF3A)
03015 mRNA surveillance pathway
128803825 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128803825 (UPF3A)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128803825 (UPF3A)
mRNA cycle factors
P-body specific factors
128803825 (UPF3A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
128803825
NCBI-ProteinID:
XP_053827072
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All DBs
Position
2:26722944..26750315
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AA seq
433 aa
AA seq
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MDAPLPQESPRRDTDAPPNPPPPSPLPPPLHPAPGKQREEKKTALSKVVIRRLPPCLTKE
QLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGL
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYCADEDKICANPEILLGEI
EAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRREEER
RKRKEVEKQKKISEKEIRIKLLKKPEKGDELAIEKHKEKGEEADIEENKWDKSPGSGSIK
SKSLESSLKELKEKSQNDSDKEQRDLERRFREKEPERQRIVQPCSCTSQELASEHIWDLQ
VNRMTAVGNPLKMLLIKSMRQIIQLELVLKRLKKQNKTVWGKSLVERNEFKIQHHHKNPL
GCFRIPQAIASTK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggacgccccgctgccgcaggagtcgccgcgccgcgacaccgacgctccgccgaacccg
ccgccgccgtccccgctgccgccgccgcttcacccggcgccagggaaacagcgggaggag
aagaaaacggcgctgagcaaagtggttattcgaaggcttcctccttgtctaaccaaggag
caactggaggaacagctgcatcctctacctgcccatgattattttgagttttgcactgct
gatcccagcctttatcctcatctctactcaagagcatacattaactttagaaatcctgag
gacatccttctttttagagatcgctttgatggctatgtcttcattgataataaaggtttg
gaatatcctgcagtggttgagtttgctccattccagaagatttcaaaaaagaagctgaag
aagaaagatgccaaagctgggagcattgaagatgatccagaatataggaaatttttagag
aattattgtgctgatgaagacaagatctgtgctaatcctgagattcttttgggagagatt
gaggccaaaacaagggaactcattgctagaagaacaacaccccttttggaatatattaaa
aatagaaaattagaaaagcagagaatacgagaagagaaaagagaagaacgaaggcggagg
gaattggagaagaaacgtttgcgggaggaagagaaaaggaagcgcagagaagaggaaaga
cgtaaaagaaaagaagtggagaagcaaaagaagatttctgaaaaagaaataaggatcaag
cttctcaagaagcctgaaaaaggagatgaactggccattgaaaagcacaaagaaaaaggg
gaagaagctgacattgaggaaaacaaatgggataaatcacctggatctgggagtataaaa
tcaaaatctttggagagttcactaaaagaacttaaagaaaagtcacaaaatgatagtgac
aaagagcaaagagatttggagagaagatttcgagaaaaagaacctgaaagacaaaggatc
gtccagccatgcagttgtaccagccaggagctcgcatccgaacacatatgggacctacaa
gtaaatcgtatgactgcagtgggaaatcctttgaagatgctcttgataaaaagtatgagg
cagataattcagctggagctagttctgaaaagactgaagaagcagaataaaacagtctgg
gggaaaagtcttgtggaaaggaatgaatttaagattcagcatcatcacaaaaatccattg
ggctgtttcagaattccacaggcaattgcatcaacaaaataa
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