Vidua macroura (Pin-tailed whydah): 128804315
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Entry
128804315 CDS
T11570
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
vmc Vidua macroura (Pin-tailed whydah)
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vmc03009
]
128804315 (LTN1)
04121 Ubiquitin system [BR:
vmc04121
]
128804315 (LTN1)
Enzymes [BR:
vmc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128804315 (LTN1)
Ribosome biogenesis [BR:
vmc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
128804315 (LTN1)
Ubiquitin system [BR:
vmc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128804315 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
FANCL_C
zf-ANAPC11
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
128804315
NCBI-ProteinID:
XP_053827957
LinkDB
All DBs
Position
2:61591800..61623461
Genome browser
AA seq
1768 aa
AA seq
DB search
MGGKNKQRTKGNLRPSSSGRAAELLAKERGTVPGFIGFGTSQSDLGYVPAIQGAEEVDSL
VDADFRMVLRKLSKRDVTTKLKAMQEFGTMCKEREAEVVRGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKVAFEKAFPSGKQP
EALVFCKDEILNVLQDHLLKETADTLSDPQTVPEEERKAKFFRILTSSLLALKKLLSVLP
EKEMHSLEEKLMSLLSQNKFWKYSKNNVSQVRSAFFELISAFCQHLPEVVKAEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYTITTIEDCWSHVNARKGVLPKLWTVLREGGRGLATVIY
PSLLPFISKVPPDIVGPKLEYFRVFFSSIIQGLSSERTIASPSESSAIITAFMECLCFAV
LQKREEDQSQIHQMLICDQLIPFISAVLKEPKLQSGPLFYQTADMLSSWEAKAELSNDDG
TDEVFQKLLSDFWGHLLKMCILHVDRLDADEKLLFAICGMLEILKNPKSAMKPNDRKSLK
IRFTDEDESERSTESLKLTEVRNSDSEIQADLQQTSRLRKEPLENLVCNLAELSIVHVNE
QKSEQHLKFLSALLNTFSSNRVFQVLLEHGNDVSPAQAESQNVVKAHNQSPSVQFLYLNL
ITWLKEDWRKDTHFLVDILYSVLHCCNNNGERKVILDDLAKMDLKWVIFLQIIQKACSST
TKLSLVSDWLKGDMLGERLVMLADDLCHLGLKPRAASSGSASSERWTLLSLVLSQHVKSE
SLIGETFVERIIDKLQAALSKAKDLSEAGDIESSVSFICDVASSFFSSVKGCLLMPSSED
LLLTVFQLCAQRQDATHLTDVLVCKLKYTWMSGVSSLVHQLQSTQKQSTFLLKAALWVKN
QVQSSSLDVKSLQVLISAVSDLLLKLMEADGQSGYLVRAYVEHVTPNKIEWGKLHESLCS
EWMHKPLLEGRLSMNCEPLGSSVKLCGTNKLPGHLCTSALLSKMVLLQLKNSVVHGNHAA
ERKKIDNIIAELLYSLQWIEELENPPYLLLEYLHMLEEMHITYEEFSTLNSTASLQQTIF
DRSEEHGRLWSLTMAKVICAENTVSWERKELFRTTEGFLPLTEGRLHTLQCLSSFLIEEE
KRELVFHCVAKLMTCTQTELSSTDGAFGCLSILNSYLKDRSIDCDHLLPAILKIIMSWKN
DNEDSFLFSCSLKEASAQLLGFNIEMMRYLPLLLKYSTAPLADNEWDFLMCSMLAWLETT
SESRLLYHVPLVQIFACASCDLASALSAYFEAAAPDSTANLPKNLVSEWKEFFSEGIHNL
LLPLLVKITGETKNASEGSFQNSVLSSLGEALTYISKDQLLNHKLPPKFVAGQKTNLPDK
LQTLLNTLSPLLLFWARPVQVSVYNMLHKLMPELPKFDDEDLKSYGDEEEELALSPPAAL
MSILATQELLLENILESIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLAFFKAASSQLRVL
YSQYFRRTKSLNKLLYHLFRLMPENPVFSGPTSEVPNKDIKTFFTEELHLDVKGSGVLSS
QIPHLACSVYHITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEISSVQTST
QLFNGMTVKARSAAREVIATYSVDDIFIELIIQLPSNYPLGSITVESGKRVGVAVQQWRN
WMLQLSTYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCK
KKFHSACLYKWFSSSNKSTCPLCRETFL
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atggggggcaagaacaagcagcgaaccaagggcaacctgcggccttctagcagtggccga
gctgcagagctccttgccaaagaacgtggaacagtgcctgggtttattggctttggaaca
tctcagagtgatctaggatatgttcctgcaattcaaggagcagaggaagtagacagcctt
gtggatgctgatttccgaatggtgttgcgaaaactttctaaaagggatgtcacaaccaag
ttaaaagctatgcaagagtttgggacgatgtgcaaggaaagagaagcggaagttgttaga
ggtgttcttccttattggccgagaatttattgtaaaatttcactagatcatgatcgccgt
gttcgagaagcaactcagcaatctttcgagcaactgattcttaaagtaaaaaaacactta
gctccttacttaaaaagtatcatgggttactggctgattgctcagtgtgacacttactcc
cctgctgcttctgctgcaaaagtagcttttgaaaaagcttttccttcaggcaaacaacct
gaagccttagtattctgtaaggatgaaattcttaatgtacttcaagatcaccttctgaag
gaaacagctgatacactcagtgaccctcaaactgtaccagaagaagaaaggaaagccaaa
tttttccggattctgacctcttcattgttagctttaaagaagttgctcagcgtgttgcca
gagaaagagatgcattcattggaagaaaagttaatgtcacttctgtcccaaaacaaattt
tggaaatatagcaaaaacaatgtatcacaggttcgctcagctttctttgagctgatttct
gctttttgccagcacttacctgaggtggtgaaagctgaagcaccaagggtttgtcctgct
gttcttctcagcattgatgacagtgatgcagtggtgtgtcctgctctttgggaagcagtg
ctttatactatcaccactattgaggactgttggagtcatgtgaatgccagaaaaggagtt
ctgccaaagctctggacagtgcttcgagaaggtgggcgaggattagctactgttatctac
cccagcctcctgcccttcattagcaaggtgcctcctgacattgtgggaccgaagctggaa
tacttcagagtttttttcagctctataattcaagggttgtcaagtgagaggacaatagcc
agtccttcagaaagttcagcaattataactgcatttatggagtgtctgtgctttgctgta
ctacagaaaagagaagaagaccagagccaaattcatcaaatgcttatatgtgaccagcta
attccttttatcagtgctgtacttaaggagcccaagttacaaagtggaccattattttat
caaacagcagacatgctgagttcctgggaagctaaagcagaactctccaatgatgatggt
acagatgaagttttccagaaactgttgtcagatttttggggccatcttttaaaaatgtgt
atacttcatgttgataggttggatgctgatgagaaattactgtttgccatatgtggtatg
ctagaaattcttaagaatccgaagagtgctatgaaaccaaacgacagaaaatctctaaaa
atcagatttacagatgaggatgagtctgaaaggagcacagagagtctaaagctcacggaa
gtgagaaatagtgactctgaaattcaggctgacttgcagcaaacttcacgtctaaggaaa
gaacctctagagaacttagtctgcaacctggctgagctgagcattgtgcatgtcaatgaa
cagaagtctgaacagcatttgaaatttctctctgccctgctcaacaccttttcctcaaac
agagttttccaagtacttttagagcacggaaatgatgtaagccctgctcaagctgaatcc
caaaatgtagtgaaagctcataaccaaagtccatctgtacaatttctgtatctgaattta
ataacctggctgaaagaagactggagaaaagacacccatttcctggttgatattttatac
agtgtacttcattgttgcaacaataatggtgaaaggaaagtcattcttgatgatttagca
aagatggatctgaagtgggttatttttctccagataattcaaaaggcgtgctcaagcaca
acgaagctttccttagtctctgactggctgaagggagatatgcttggagaaagactggta
atgctggcagatgatctgtgtcacctgggcttaaaacctagagcagcctcatcaggatca
gcctcttcagaaaggtggaccctcctgagcttggtgttgtcgcagcatgttaaaagtgaa
tcattgattggtgaaacttttgttgaaaggattattgataaacttcaagcagctctgtct
aaagcaaaggatctttctgaagctggagatattgaatcatcagtatctttcatctgcgat
gtggcctcaagctttttcagctcagtgaaaggctgtttgctgatgccatcctcagaagac
ttgctccttaccgtcttccagctgtgtgctcagaggcaggatgcaacacacttgacagat
gtacttgtatgcaaattaaaatacacttggatgtctggtgtaagttcacttgtgcatcag
cttcagagcactcagaaacagagcacctttttgcttaaagctgcactgtgggtcaagaac
caagttcagtcttcctctttggatgttaaaagtcttcaggttttgatctctgcagtcagt
gatttattgttgaagctcatggaagctgatggacagtctggatatcttgtgagagcttat
gttgagcacgtcacaccgaacaaaattgagtgggggaaattgcacgagtctctgtgctct
gagtggatgcacaagcctcttttggaaggaaggcttagtatgaattgtgaacctctggga
tcaagtgtcaagctgtgtggcacaaataaacttccaggccatctgtgtacttcagcctta
ttaagtaaaatggtactacttcaactgaaaaatagtgtagtccatggaaatcatgctgct
gaaagaaagaaaattgataatataattgcagaactgttgtattcattacaatggattgaa
gaattggagaatcctccttacctgcttctggaatatcttcatatgttagaagagatgcac
ataacgtatgaggagttcagtactctgaatagtacagctagtctgcagcaaactatattt
gacagatcagaggaacatggaagactctggtccttaaccatggccaaagtgatctgtgct
gagaacactgtatcctgggagaggaaagaacttttcaggacaacagaagggttccttcca
ttaacagagggcagattgcatacacttcaatgtttatcgtctttcttaattgaggaagaa
aagagggaacttgtcttccattgtgtggccaaacttatgacatgtacacagacagagctt
tccagcactgatggagcatttgggtgtctttccattttgaactcctacttgaaggacaga
agtattgattgtgaccatctactacctgcaatactgaaaatcataatgtcttggaagaat
gataatgaggacagctttctttttagctgcagtctgaaagaagcaagtgctcaattgctt
ggttttaacattgagatgatgcgttaccttcccttgttgctgaaatattccacagctcct
ttggctgataacgagtgggactttttgatgtgctccatgctggcttggttagagacaaca
agtgaaagccgtttgctttaccatgtcccgcttgtgcagatttttgcttgtgccagttgt
gacttagcatctgcccttagcgcttactttgaggctgcagctcctgacagtactgcaaat
cttcctaagaacttggtcagtgaatggaaagaattcttttctgagggaattcacaatttg
ctgttacctttgttggtgaaaatcacaggagaaaccaaaaatgcatcagaaggctctttt
cagaactctgtgttatcatcgttgggtgaagctctaacttacatctcaaaggaccagttg
ttaaaccataagctgccaccaaagtttgttgcaggccagaagacaaatcttccagataaa
ctccagactctactgaacacactctctccattgttgcttttctgggctcgacctgtacag
gtttctgtctacaatatgctgcataagttaatgcctgaattgcctaaatttgatgatgaa
gatctcaagtcatatggtgatgaagaggaggaattggcattatcacctccagcagctctt
atgtctatcctggcgactcaagaactcttgctagaaaacatcctggaatccattccagtt
ggagaatttgcagttattcaacccctgagcgatgagttctgccttgttctagggtatctt
ctcacttggaagttaacattagctttctttaaggcagcttcttctcagctacgagttctc
tactcacaatactttagaagaactaaaagcttgaataaactgctttatcacttgttcagg
cttatgcctgaaaaccctgtcttttctgggccaacttcagaagttccaaataaggacata
aaaaccttctttactgaagagcttcatttagatgtcaaagggtcaggggtgctgtcatca
cagatcccacacttggcctgctctgtgtaccatataacactgaaagatctgccagccatg
gtgaggctgtggtggaatagctgtgagaagcgtgtcttcaatgttgtggataaattcaca
agcaaatatgtcagcagcgtgctctcctcccaggaaatatcttctgttcagactagcaca
cagttatttaatggcatgacagtaaaagctcggtctgcagcacgagaagtcattgcaacc
tattccgttgatgatatctttattgaactaataatacagcttccatcaaattatccactg
ggatccataacagttgagagtggaaagagggttggtgtggctgtacagcagtggcgcaat
tggatgctacagttaagcacatatcttacacatcagaatggaagtattatggaaggctta
tctttgtggaaaaataatgtggataaacgttttgaaggtgttgaagattgcatgatctgt
ttttcagtcattcatggttcaaactattctcttcccaaaaaagcgtgcagaacatgcaag
aagaagtttcattcagcttgcttgtacaaatggttctcatccagcaacaaatccacatgt
ccactctgtcgagagacattcttgtga
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integrated database retrieval system
