Vidua macroura (Pin-tailed whydah): 128804483
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Entry
128804483 CDS
T11570
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
vmc Vidua macroura (Pin-tailed whydah)
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vmc03021
]
128804483 (SCAF8)
03041 Spliceosome [BR:
vmc03041
]
128804483 (SCAF8)
Transcription machinery [BR:
vmc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128804483 (SCAF8)
Spliceosome [BR:
vmc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128804483 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128804483
NCBI-ProteinID:
XP_053828208
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All DBs
Position
3:complement(55808508..55897030)
Genome browser
AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAPSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKEAPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPINKPESDDKGPHLTD
LQLSSSENNRSVQSDVSSTSGLVGGVQTPSVSSNSGLTGEGPPSTVSSSSGLAGGVQPPS
VSSSSGLVGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPN
VSSSSGLLAGVHPPSVSSSPGLLTGMQPPSVSSSSGVLAGVQPPSVSSNSGLLIMPPPNV
SSSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHLNISNQRMPGMPLIDIRPGLMPHSPG
PRFPLMQPGMPPQRTIPPPTILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNIS
NPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPV
DGREHFARPHIDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQDD
PELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagattaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagagtacaaggtg
cctggtctgtatgtcattgactccattgtaaggcagtcccggcatcagtttggacaagaa
aaggatgtatttgcgccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacaccaggt
acacctgtgactccagttactccagccaatgtggcgccgagtttgcctgatccttgggta
tctcagattgcaaacacagacacccttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcgctacttcaagccctggatgccggtctcgttgtccagttacaggcgctcaccgcacaa
ctcacagctgcagctgctgctgctaacacacttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagagcct
aaaaaggaagctccctcttcccagttgccattagtaccagaatctgtgaacaactcactt
tttcaccaactagctgaacagctacagcagcaaaatttagaacatctcagacaacagctt
ctggagcaacagcagcctcaaaaggcaagccctgaggagaatcaagaaggaaattttggt
tcagagcactctgcatcaccatcacaaggaagtagtcaacagcagtttttagaagtggaa
gcaaatgtagatgattccatggatattcaacaacaggacatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaacaagaagaaaagaaatcggctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatcacgg
tctggttctcgtaagcggaaacacagaaaacgttcacgctcaagatcaagagaaaggaag
agaaagtcatctcggtcgtactccagtgaaagaagggctagggaaagggaaaaagaacgt
cagaaaaagggattgcctcctatacggtcaaaaacactaagtgtttgcagtactactctt
tgggtagggcaagtagacaagaaggctacccagcaagatttaacaaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagaggatgtgcttatgtctgtatg
gtacatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcatataaaatt
ggatcgaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggagtttcctatattccatgggagaaagtgaaattggat
gatctggagggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctaca
gttgataagagtaccgttattacaacacagacagaagcttacacacaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggttatagcccaattcctcctccacccttcttgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcctccagttccgcctgtt
gtcccaccacctgttgtcccgccacctgttgtcccaccagttgttccaacacctttagta
cagcctccattaccaattgcacaagagacaatgaaggatgttccttttactggccttgtt
ctaccagttggcacagttactagcaatcttgctactccaactttatctgctggaagtgtt
tttaatcccctgccaatcaacaaaccagaatcagatgacaaaggaccacatcttacagac
cttcagctttcttccagtgaaaacaatagatctgtgcaaagtgatgtctcaagtacctct
ggacttgttggaggagtgcagacacccagtgtctcaagcaattctgggcttactggagaa
gggccaccatccactgtctcaagtagctctgggcttgcagggggagttcagccacccagt
gtttcaagcagctctggacttgtaggaggagtgcaaccaccaactgtttccagcaattct
ggtcttgcaggaggaatgcagctacctgctgtctctagtagctcttctcttgctggcggg
attcagccaactaacgcctcaagtagctctggacttatggctggagtgccaccaccaaat
gtctcaagtagctcagggcttctagctggagttcatccgcccagtgtctcaagcagccct
ggccttctgacaggaatgcagccacccagtgtgtccagcagctcaggagttctggcagga
gtacagccaccgagtgtttcaagcaactctgggcttctcataatgccaccacccaatgtt
tcaagtagttctggacttatgggagtaccaccaccaaatatttcaagtaattctggactt
ctggcaatgcagcatccagctgcagttccaaacatgcctcatttaaatatcagtaatcaa
agaatgccaggaatgcctcttatagatatccgtccaggcttaatgccccattcgcctgga
ccaaggtttccattaatgcagccaggaatgccaccacagcgtactattcctcctcccaca
atccttgatccatctcttcacccaccaccacctcgaggtccttttcctccgggagatatt
tttaatcaaacagaaagaccttttggaacaccaggaagacaaaatattgataacatttct
aatccagagaaaaggctaccacttggaggtgataacattcaacaggagggggacagagat
tatcgctttcctccggtggaaaaccgagataatcttaacagaccatctccagtggatgtc
agagattctgttggacgtccaccagttgatccaagagagggcataggaaggcctccagta
gatggaagagaacactttgcaagaccacatatagacatgagagaaaattttggaagaccg
ggtatagataaccttggccgaagagagcattttggtttcaattcagacaagcactgggga
cagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggccctaaa
ggctttcatgaagacagagagaggtttcggcatgtaaactataggtttgatagtagaagt
ggtcctagttggaatagaggatttgaacaagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaatt
aatggaaacaggtttggaagagacagaatgtcaaacaactggatcccgcctccacatcca
cgggtttttgaatattttgatggggccacttctcaacgcaaagctgataatatgccccag
gtaaatggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggatgat
ccagaactttatgaaaaactgacatcttctgtcgagataaacaaagagaagagtgacaca
gaagctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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