Vidua macroura (Pin-tailed whydah): 128804569
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Entry
128804569 CDS
T11570
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128804569 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128804569 (HBS1L)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128804569 (HBS1L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Aq_aa27
GIP1_N
Motif
Other DBs
NCBI-GeneID:
128804569
NCBI-ProteinID:
XP_053828400
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All DBs
Position
3:58764181..58823669
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AA seq
687 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPAAFAEPLEEEYG
CEGTDAAADCFTPTHQLTEVDRARLHSCLDQMREVLAESIPEQAMVQAVLDTKFDVQKAL
DLVLSQGSKQNVKTKNKDAVILAKTTKGKTRDCQSARMESEIVPKITKMTVSGKKQSMGF
EVPCAIAEENGHTNTPQKGLLPEDISVASGVLEAVSKSTPSPQVAQVSEEQNMVPTPAKK
SSKAKPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETPTKVITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQSSDLTQWYKGKCLLEQIDSF
KPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPITKG
FPVLLHYQTVSEPATITRLLSVLHKSTGEVTKKKPKFLAKGQNALIELQTQRPVALELYK
DFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgtccgaggatataactacgacgaagactttgaagatgatgat
gtgtatggccaatcagtagaagatgattattgcatttctccttcaacagcagctcaattt
atttactccagacgagacaaaccagccgcgtttgctgagccattagaagaagaatatggc
tgtgaaggtactgatgctgctgctgattgttttacacccactcatcagttgactgaagtt
gatagagcccgtcttcattcatgccttgatcaaatgagagaagttttggcagaatccata
ccagaacaagcaatggtgcaagcagtactggatactaaatttgatgtacaaaaggctttg
gatcttgtgctttcgcaaggcagtaagcaaaatgtgaagaccaagaataaggatgctgtg
attttagcaaagactacaaaaggaaaaacaagggattgccagtcagccagaatggaatct
gaaattgtgccaaaaattaccaaaatgacagtgtctggaaagaaacaatctatgggattt
gaagttccatgtgcaattgctgaggaaaatggccacactaatacacctcagaaaggacta
ttacctgaagacatcagtgtagcttctggggtacttgaggctgtctcaaaatctactcct
tcaccccaagtagcgcaggtttcagaagagcagaatatggtgcctactccagcaaagaag
tcaagcaaggcaaaaccacaaatagatgtgaaagcagagttggagaagagacaaggagga
aagcaactgctgaatttggtggtaataggacatgttgatgcaggcaaaagtactttaatg
ggtcatttgctctaccttttgggaaatgtgaacaaaagaactatgcacaaatacgaacag
gaatctaaaaaggctggtaaagcttcatttgcctatgcatgggtcttggatgaaactggt
gaagaaagagaaaggggagtaacaatggatgtgggtatgaccaaattcgagacaccaact
aaagtaattacactgatggatgctccaggccacaaggacttcattccaaatatgatcaca
ggagctgcacaggctgatgtggcaattttggttgtggatgccagcagaggagagtttgag
gcagggtttgagacgggtggacaaactcgagaacatggattattagtgcgctctcttgga
gtgacacagttggctgttgcagttaacaaaatggaccaggtcaattggcaacaggaaaga
tttcaggaaattacaagtaagctcggccaatttcttaagcaagctggctttaaggaatca
gatgtggcttatatcccaacaagtggccttggtggtgaaaatctagtcacaaggggtcag
tcaagtgacctcacacaatggtataaaggaaagtgtttgttggagcaaattgattctttc
aagccaccacagagatcagtggataaaccatttagactgtgtgttgctgatgtttttaaa
gaccaaggttcaggattttgtgtgactggtaaaatagaagcaggctatattcaggttgga
gaacgacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcac
gatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgtgggctgtgtattttgtgatcccaaggaacccataaaagtt
tgcactcggttcagagctcgggttctcatcttcaatattgaggttccaatcactaaagga
tttcctgtgcttttacactatcaaacagtaagtgaacctgctactattacaagactgttg
agtgttctgcacaaaagtactggtgaagtgacaaagaaaaaacctaagttcttggctaaa
ggccagaatgctctaatagaactacaaactcaaagacctgttgctctagagttgtacaaa
gattttaaagagctggggagatttatgttacgctacagtggttccactattgctgcagga
gttgttacagagattaaagaatga
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