Vidua macroura (Pin-tailed whydah): 128804714
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Entry
128804714 CDS
T11570
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03015
mRNA surveillance pathway
vmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128804714 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
128804714 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128804714 (PABPC1)
03041 Spliceosome [BR:
vmc03041
]
128804714 (PABPC1)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128804714 (PABPC1)
mRNA cycle factors
Stress granule specific factors
128804714 (PABPC1)
Spliceosome [BR:
vmc03041
]
Complex C
Other components
Complex C specific factors
128804714 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
128804714
NCBI-ProteinID:
XP_053828763
LinkDB
All DBs
Position
1:complement(133266837..133282502)
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AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctgcacccc
gacgtgaccgaggccatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctcgctcggatacgcctatgtcaacttccag
cagcccgccgacgctgaaagagctttggacaccatgaactttgatgtcattaagggcaaa
ccagtgcgcatcatgtggtctcagcgcgatccatctctacgcaaaagcggtgtaggaaat
atcttcatcaaaaacttggacaaatcaattgataacaaagctttgtatgacacattttct
gcttttgggaacatcctgtcttgtaaggtggtgtgtgatgaaaatggatccaagggttat
ggatttgtgcattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgcaaggaacgtgag
gcagagcttggagccagagcaaaagaattcaccaatgtttacatcaaaaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgctctaagtgtg
aaagttatgactgatgagagtggaaaatccaaaggctttggcttcgttagttttgaaaga
catgaagatgcccaaaaagctgtagatgaaatgaatgggaaagagctcaatggaaaacaa
atctatgttggccgggctcagaaaaaggtggaaagacagacggagctgaagcgcaagttt
gaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctttatgtgaaaaat
cttgatgatgggattgatgatgagcgtctccgaaaagagttctccccatttggtacaatc
actagtgcaaaggtgatgatggaaggtggccgcagcaaaggatttggatttgtatgcttt
tcgtcaccagaagaagccaccaaagcagtcacagaaatgaatggtagaatcgtggctact
aaaccattatatgtagctctagcccaacgtaaagaggagcgccaagctcatctcaccaac
cagtacatgcagaggatggcaagtgtaagagcagtacctaatcctgtaatcaacccctac
cagccagcacctccttcaggatacttcatggcagctattcctcagactcagaaccgtgct
gcgtactatcctactaatcagctcgctcaacttgctagacctagtcctcgctggactgct
cagggtgccagacctcatccattccaaaacatgcctggtgcgatccgcccagcagcaccc
agaccaccgttcagtaccatgagaccagcttcttcccaagttccacgagtcatgtcaacg
cagcgtgttgctaatacatcaacacaaacgatgggtccacgtcctgcagcagcagctact
gcggccactcctgccgtgcgcacggtaccacagtacaaatacgctgcgggtgttcgcaat
cctcagcagcacctcaacacgcagccgcaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaag
cagatgttaggtgaacgtctattcccccttattcaaagcatgcaccctactctggcgggt
aagatcactggtatgttgttggagattgacaactctgaactcctccacatgctggagtct
cctgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagttaataatcccactggggttccaagtgtttaa
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